| 2013 | AMIA | A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal. | Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitris Zeginis, Konstantinos A. Tarabanis, Gai Elhanan, Michael Halper, Natasha F. Noy, James Geller |
| 2013 | AMIA | Identifying Inconsistencies in SNOMED CT Problem Lists using Structural Indicators. | Ankur Agrawal, Yehoshua Perl, Yan Chen, Gai Elhanan, Mei Liu |
| 2013 | AMIA | Scalability of Abstraction-Network-Based Quality Assurance to Large SNOMED Hierarchies. | Christopher Ochs, Yehoshua Perl, James Geller, Michael Halper, Huanying Helen Gu, Yan Chen, Gai Elhanan |
| 2012 | CIKM | Clinical clarity versus terminological order: the readiness of SNOMED CT concept descriptors for primary care. | Zhe He, Michael Halper, Yehoshua Perl, Gai Elhanan |
| 2009 | AMIA | Comparing Inconsistent Relationship Configurations Indicating UMLS Errors. | James Geller, C. Paul Morrey, Junchuan Xu, Michael Halper, Gai Elhanan, Yehoshua Perl, George Hripcsak |
| 2009 | AMIA | Auditing SNOMED Relationships Using a Converse Abstraction Network. | Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen, Yehoshua Perl, James Geller, Kent A. Spackman |
| 2008 | AMIA | Auditing Complex Concepts in Overlapping Subsets of SNOMED. | Yue Wang, Duo Helen Wei, Junchuan Xu, Gai Elhanan, Yehoshua Perl, Michael Halper, Yan Chen, Kent A. Spackman, George Hripcsak |
| 2007 | AMIA | Evaluation of a UMLS Auditing Process of Semantic Type Assignments. | Huanying Gu, George Hripcsak, Yan Chen, C. Paul Morrey, Gai Elhanan, James J. Cimino, James Geller, Yehoshua Perl |
| 2002 | AMIA | Rule-enforcing, Frame-based Terminology Environment for Controlled Medical Dictionaries. | Gai Elhanan |
| 2000 | AMIA | Knowledge Sharing in the Construction of an Anatomical Navigational Ontology. | Michael Krauthammer, Nina Wacholder, Stephen B. Johnson, Gai Elhanan, Pat Molholt |
| 1998 | AMIA | Automated Integration of a Diagnostic Decision Support System with a Large Scale Clinical Information System: Aspects of Feasibility. | Gai Elhanan, James J. Cimino |
| 1997 | AMIA | Supporting infobuttons with terminological knowledge. | James J. Cimino, Gai Elhanan, Qing T. Zeng |
| 1997 | AMIA | Controlled vocabulary and design of laboratory results displays. | Gai Elhanan, James J. Cimino |