| 2026 | ACL | AROMA: Augmented Reasoning Over a Multimodal Architecture for Virtual Cell Genetic Perturbation Modeling. | Zhenyu Wang, Geyan Ye, Wei Liu, Man Tat Alexander Ng |
| 2025 | ICLR | Atomas: Hierarchical Adaptive Alignment on Molecule-Text for Unified Molecule Understanding and Generation. | Yikun Zhang, Geyan Ye, Chaohao Yuan, Bo Han, Long-Kai Huang, Jianhua Yao, Wei Liu, Yu Rong |
| 2025 | KDD | Annotation-guided Protein Design with Multi-Level Domain Alignment. | Chaohao Yuan, Songyou Li, Geyan Ye, Yikun Zhang, Long-Kai Huang, Wenbing Huang, Wei Liu, Jianhua Yao, Yu Rong |
| 2019 | CCGRID | A Novel Stochastic Gradient Descent Algorithm Based on Grouping over Heterogeneous Cluster Systems for Distributed Deep Learning. | Wenbin Jiang, Geyan Ye, Laurence T. Yang, Jian Zhu, Yang Ma, Xia Xie, Hai Jin |
| 2018 | ICANN | FiLayer: A Novel Fine-Grained Layer-Wise Parallelism Strategy for Deep Neural Networks. | Wenbin Jiang, Yangsong Zhang, Pai Liu, Geyan Ye, Hai Jin |
| 2016 | ICPADS | A Fine-Grained Parallel Intra Prediction for HEVC Based on GPU. | Wenbin Jiang, Ye Chi, Hai Jin, Xiaofei Liao, Yangsong Zhang, Geyan Ye |