| 2025 | ICLR | SMITE: Segment Me In TimE. | Amirhossein Alimohammadi, Sauradip Nag, Saeid Asgari Taghanaki, Andrea Tagliasacchi, Ghassan Hamarneh, Ali Mahdavi-Amiri |
| 2025 | MICCAI | What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation? | Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh |
| 2025 | WACV | Debiasify: Self-Distillation for Unsupervised Bias Mitigation. | Nourhan Bayasi, Jamil Fayyad, Ghassan Hamarneh, Rafeef Garbi, Homayoun Najjaran |
| 2024 | CVPR | Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images. | Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2024 | ECCV | AFreeCA: Annotation-Free Counting for All. | Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh |
| 2024 | ICLR | SLiMe: Segment Like Me. | Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh |
| 2024 | MICCAI | Lesion Elevation Prediction from Skin Images Improves Diagnosis. | Kumar Abhishek, Ghassan Hamarneh |
| 2024 | MICCAI | Segmentation Style Discovery: Application to Skin Lesion Images. | Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh |
| 2024 | MICCAI | BiasPruner: Debiased Continual Learning for Medical Image Classification. | Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi |
| 2024 | MICCAI | TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. | Ashish Sinha, Ghassan Hamarneh |
| 2023 | MICCAI | Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification. | Nourhan Bayasi, Siyi Du, Ghassan Hamarneh, Rafeef Garbi |
| 2023 | MICCAI | MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. | Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2023 | MICCAI | AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. | Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2022 | AAAI | Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? | Weina Jin, Xiaoxiao Li, Ghassan Hamarneh |
| 2022 | CVPR | BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features. | Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2022 | ECCV | FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. | Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2022 | ECCV | CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. | Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh |
| 2022 | MICCAI | Deep Multimodal Guidance for Medical Image Classification. | Mayur Mallya, Ghassan Hamarneh |
| 2021 | CVPR | D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation. | Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh |
| 2021 | MICCAI | Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification. | Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi |
| 2020 | CVPR | Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. | Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew |
| 2020 | MICCAI | Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising. | Saeed Izadi, Ghassan Hamarneh |
| 2019 | CVPR | A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. | Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh |
| 2019 | MICCAI | Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. | Kumar Abhishek, Ghassan Hamarneh |
| 2019 | MICCAI | ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. | Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi |
| 2019 | MICCAI | Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network. | Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi |
| 2019 | MICCAI | Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. | Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh |
| 2019 | MICCAI | Learning to Segment Skin Lesions from Noisy Annotations. | Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh |
| 2019 | MICCAI | Improved Inference via Deep Input Transfer. | Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh |
| 2019 | MICCAI | Select, Attend, and Transfer: Light, Learnable Skip Connections. | Saeid Asgari Taghanaki, Acha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh |
| 2019 | MICCAI | InfoMask: Masked Variational Latent Representation to Localize Chest Disease. | Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio |
| 2019 | MICCAI | Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning. | Hanene Ben Yedder, Majid Shokoufi, Ben Cardoen, Farid Golnaraghi, Ghassan Hamarneh |
| 2019 | MICCAI | Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification. | Chris Yoon, Ghassan Hamarneh, Rafeef Garbi |
| 2019 | MICCAI | Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. | Mengliu Zhao, Ghassan Hamarneh |
| 2018 | ICASSP | Joint Gender-, Tone-, Vowel- Classification Via Novel Hierarchical Classification for Annotation of Monosyllabic Mandarin Word Tokens. | Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang |
| 2018 | MICCAI | Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images. | Acha BenTaieb, Ghassan Hamarneh |
| 2018 | MICCAI | Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma Using Multiple Instance Decisions Aggregated CNN. | Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi |
| 2018 | MICCAI | Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? | Saeed Izadi, Kathleen P. Moriarty, Ghassan Hamarneh |
| 2018 | MICCAI | Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. | Zahra Mirikharaji, Ghassan Hamarneh |
| 2018 | MICCAI | Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. | Saeid Asgari Taghanaki, Arkadeep Das, Ghassan Hamarneh |
| 2018 | MICCAI | Deep Learning Based Image Reconstruction for Diffuse Optical Tomography. | Hanene Ben Yedder, Acha BenTaieb, Majid Shokoufi, Amir Zahiremami, Farid Golnaraghi, Ghassan Hamarneh |
| 2018 | MICCAI | TreeNet: Multi-loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees. | Mengliu Zhao, Ghassan Hamarneh |
| 2017 | MICCAI | Uncertainty Driven Multi-loss Fully Convolutional Networks for Histopathology. | Acha BenTaieb, Ghassan Hamarneh |
| 2017 | MICCAI | Prediction of Brain Network Age and Factors of Delayed Maturation in Very Preterm Infants. | Colin J. Brown, Kathleen P. Moriarty, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh |
| 2017 | MICCAI | SwifTree: Interactive Extraction of 3D Trees Supporting Gaming and Crowdsourcing. | Mian Huang, Ghassan Hamarneh |
| 2017 | MICCAI | Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. | Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2017 | MICCAI | Collage CNN for Renal Cell Carcinoma Detection from CT. | Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2017 | MICCAI | Graph Geodesics to Find Progressively Similar Skin Lesion Images. | Jeremy Kawahara, Kathleen P. Moriarty, Ghassan Hamarneh |
| 2017 | MICCAI | Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal Paths. | Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh |
| 2016 | MICCAI | Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface. | Payam Ahmadvand, Nirn Duggan, Franois Bnard, Ghassan Hamarneh |
| 2016 | MICCAI | Topology Aware Fully Convolutional Networks for Histology Gland Segmentation. | Acha BenTaieb, Ghassan Hamarneh |
| 2016 | MICCAI | Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes. | Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh |
| 2016 | MICCAI | Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. | Mohammad Arafat Hussain, Ghassan Hamarneh, Timothy W. O'Connell, Mohammed F. Mohammed, Rafeef Abugharbieh |
| 2016 | MICCAI | Multi-resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers. | Jeremy Kawahara, Ghassan Hamarneh |
| 2015 | MICCAI | Automatic Vessel Segmentation from Pulsatile Radial Distension. | Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2015 | MICCAI | Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation. | Acha BenTaieb, Hector Li-Chang, David G. Huntsman, Ghassan Hamarneh |
| 2015 | MICCAI | Prediction of Motor Function in Very Preterm Infants Using Connectome Features and Local Synthetic Instances. | Colin J. Brown, Steven P. Miller, Brian G. Booth, Kenneth J. Poskitt, Vann Chau, Anne R. Synnes, Jill G. Zwicker, Ruth E. Grunau, Ghassan Hamarneh |
| 2015 | MICCAI | Corpus Callosum Segmentation in MS Studies Using Normal Atlases and Optimal Hybridization of Extrinsic and Intrinsic Image Cues. | Lisa Y. W. Tang, Ghassan Hamarneh, Anthony Traboulsee, David K. B. Li, Roger C. Tam |
| 2014 | MICCAI | Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. | Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2014 | MICCAI | Topology Preservation and Anatomical Feasibility in Random Walker Image Registration. | Shawn Andrews, Lisa Tang, Ghassan Hamarneh |
| 2014 | MICCAI | Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. | Jeremy Kawahara, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh |
| 2014 | MICCAI | Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. | Masoud S. Nosrati, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh |
| 2013 | ICCV | Bounded Labeling Function for Global Segmentation of Multi-part Objects with Geometric Constraints. | Masoud S. Nosrati, Shawn Andrews, Ghassan Hamarneh |
| 2013 | MICCAI | Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. | Alborz Amir-Khalili, Masoud S. Nosrati, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2013 | MICCAI | 3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. | Alborz Amir-Khalili, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2013 | MICCAI | A Cross-Sectional Piecewise Constant Model for Segmenting Highly Curved Fiber Tracts in Diffusion MR Images. | Brian G. Booth, Ghassan Hamarneh |
| 2013 | MICCAI | Uncertainty in Tractography via Tract Confidence Regions. | Colin J. Brown, Brian G. Booth, Ghassan Hamarneh |
| 2013 | MICCAI | Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. | Jeremy Kawahara, Chris McIntosh, Roger C. Tam, Ghassan Hamarneh |
| 2013 | MICCAI | Improving Probabilistic Image Registration via Reinforcement Learning and Uncertainty Evaluation. | Tayebeh Lotfi, Lisa Tang, Shawn Andrews, Ghassan Hamarneh |
| 2013 | MICCAI | Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. | Hamidreza Mirzaei, Lisa Tang, Ren Werner, Ghassan Hamarneh |
| 2013 | MICCAI | Segmentation of Cells with Partial Occlusion and Part Configuration Constraint Using Evolutionary Computation. | Masoud S. Nosrati, Ghassan Hamarneh |
| 2013 | MICCAI | Random Walks with Efficient Search and Contextually Adapted Image Similarity for Deformable Registration. | Lisa Y. W. Tang, Ghassan Hamarneh |
| 2012 | MICCAI | Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework. | Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh |
| 2011 | ICCV | Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space. | Shawn Andrews, Chris McIntosh, Ghassan Hamarneh |
| 2011 | MICCAI | Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles. | Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, W. Darlene Reid |
| 2011 | MICCAI | Detecting Structure in Diffusion Tensor MR Images. | K. Krishna Nand, Rafeef Abugharbieh, Brian G. Booth, Ghassan Hamarneh |
| 2011 | MICCAI | A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences. | Lisa Tang, Ghassan Hamarneh, Tim Bressmann |
| 2011 | MICCAI | Active Learning for Interactive 3D Image Segmentation. | Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2010 | CVPR | Vessel scale-selection using MRF optimization. | Hengameh Mirzaalian, Ghassan Hamarneh |
| 2010 | CVPR | Group MRF for fMRI activation detection. | Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh |
| 2010 | CVPR | Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization. | Lisa Tang, Ghassan Hamarneh |
| 2010 | ECCV | Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. | Josna Rao, Rafeef Abugharbieh, Ghassan Hamarneh |
| 2010 | ICISP | A New Preprocessing Filter for Digital Mammograms. | Peyman Rahmati, Ghassan Hamarneh, Doron Nussbaum, Andy Adler |
| 2010 | MICCAI | Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation. | Shawn Andrews, Ghassan Hamarneh, Ahmed Saad |
| 2010 | MICCAI | Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping. | Neda Changizi, Ghassan Hamarneh |
| 2010 | MICCAI | Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. | Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron D. Ward, Roger C. Tam |
| 2010 | MICCAI | Detecting Brain Activation in fMRI Using Group Random Walker. | Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2010 | MICCAI | Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. | Bernard Ng, Arash Vahdat, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2010 | MICCAI | Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. | Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2009 | CVPR | A graph-based approach to skin mole matching incorporating template-normalized coordinates. | Hengameh Mirzaalian, Ghassan Hamarneh, Tim K. Lee |
| 2009 | ISVC | Multi-label MRF Optimization via a Least Squares | Ghassan Hamarneh |
| 2009 | ISVC | Optimal Weights for Convex Functionals in Medical Image Segmentation. | Chris McIntosh, Ghassan Hamarneh |
| 2009 | ISVC | Adaptive Contextual Energy Parameterization for Automated Image Segmentation. | Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2009 | MICCAI | Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. | Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin Smith, Marinko Sarunic |
| 2008 | CVPR | SMRFI: Shape matching via registration of vector-valued feature images. | Lisa Tang, Ghassan Hamarneh |
| 2008 | MICCAI | Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps. | Ghassan Hamarneh, Preet Jassi, Lisa Tang |
| 2008 | MICCAI | Kinetic Modeling Based Probabilistic Segmentation for Molecular Images. | Ahmed Saad, Ghassan Hamarneh, Torsten Mller, Benjamin Smith |
| 2007 | MICCAI | Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. | Chris McIntosh, Ghassan Hamarneh |
| 2007 | MICCAI | Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. | Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh |
| 2007 | MICCAI | Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. | Ahmed Saad, Benjamin Smith, Ghassan Hamarneh, Torsten Mller |
| 2007 | MICCAI | Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. | Aaron D. Ward, Ghassan Hamarneh |
| 2007 | PG | Contour Correspondence via Ant Colony Optimization. | Oliver van Kaick, Ghassan Hamarneh, Hao Zhang, Paul Wighton |
| 2006 | CVPR | Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. | Chris McIntosh, Ghassan Hamarneh |
| 2006 | MICCAI | Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. | Chris McIntosh, Ghassan Hamarneh |
| 2003 | IPAS | Physics-based shape deformations for medical image analysis. | Ghassan Hamarneh, Tim McInerney |
| 2003 | MICCAI | Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. | Ghassan Hamarneh, X. Josette Chen, Brian Neiman, Jeff Henderson, R. Mark Henkelman |
| 2003 | MICCAI | Anatomically Guided Registration of Whole Body Mouse MR Images. | Natasa Kovacevic, Ghassan Hamarneh, R. Mark Henkelman |
| 2001 | BMVC | Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. | Ghassan Hamarneh, Tomas Gustavsson |
| 2001 | MICCAI | Deformable Organisms for Automatic Medical Image Analysis. | Ghassan Hamarneh, Tim McInerney, Demetri Terzopoulos |
| 2000 | SMC | Active contour models: application to oral lesion detection in color images. | Ghassan Hamarneh, Artur Chodorowski, Tomas Gustavsson |
| 2000 | SMC | Statistically constrained snake deformations. | Ghassan Hamarneh, Tomas Gustavsson |