| 2025 | CISS | Training threshold Boolean networks: applications to gene regulatory network modeling. | Gonzalo A. Ruz |
| 2024 | CIARP | Gene Regulatory Network for the Tryptophanase Operon Under the Threshold Boolean Network Model. | Felipe Encina-Chacana, Gonzalo A. Ruz |
| 2024 | CIARP | Comparative Analysis of Spatial and Spectral Methods in GNN for Power Flow in Electrical Power Systems. | Paulo A. Espinoza, Gonzalo A. Ruz |
| 2024 | CIBCB | SMOTE for gene regulatory network sampling. | Gonzalo A. Ruz, Nitesh V. Chawla |
| 2023 | CIBCB | Inference of threshold network models of the tryptophan operon in Escherichia coli. | Gonzalo A. Ruz |
| 2022 | CIBCB | Learning binary threshold networks for gene regulatory network modeling. | Gonzalo A. Ruz, Eric Goles |
| 2022 | IJCNN | Characterizing consensus in threshold Boolean networks. | Gonzalo A. Ruz, Eric Goles |
| 2020 | CIBCB | Estimating SIR model parameters from data using differential evolution: an application with COVID-19 data. | Sergio Rica, Gonzalo A. Ruz |
| 2019 | ICANN | Market Basket Analysis Using Boltzmann Machines. | Mauricio A. Valle, Gonzalo A. Ruz |
| 2019 | ICTAI | Random Vector Functional Link with Naive Bayes for Classification Problems of Mixed Data. | Gonzalo A. Ruz, Pablo A. Henrquez |
| 2018 | CEC | Reconstruction of Boolean Regulatory Models of Flower Development Exploiting an Evolution Strategy. | Gonzalo A. Ruz, Eric Goles, Sylvain Sen |
| 2018 | IJCNN | Twitter Sentiment Classification Based on Deep Random Vector Functional Link. | Pablo A. Henrquez, Gonzalo A. Ruz |
| 2017 | CIBCB | A novel representation for boolean networks designed to enhance heritability and scalability. | Daniel A. Ashlock, Gonzalo A. Ruz |
| 2017 | CIBCB | Inferring bistable lac operen Boolean regulatory networks using evolutionary computation. | Gonzalo A. Ruz, Daniel A. Ashlock, Thomas Ledger, Eric Goles |
| 2017 | ICMLA | An Empirical Study of the Hidden Matrix Rank for Neural Networks with Random Weights. | Pablo A. Henrquez, Gonzalo A. Ruz |
| 2016 | CEC | Neutral space analysis of gene regulatory network models of salt stress response in Arabidopsis using evolutionary computation. | Gonzalo A. Ruz, Tania Timmermann, Eric Goles Ch. |
| 2015 | CIBCB | Reconstruction of a GRN model of salt stress response in arabidopsis using genetic algorithms. | Gonzalo A. Ruz, Tania Timmermann, Eric Goles |
| 2014 | ALIFE | Attraction Basins in a Lac Operon Model Under Different Update Schedules. | Marco Montalva, Gonzalo A. Ruz, Eric Goles |
| 2014 | CIBCB | Neutral graph of regulatory Boolean networks using evolutionary computation. | Gonzalo A. Ruz, Eric Goles Ch. |
| 2012 | CIBCB | Reconstruction and update robustness of the mammalian cell cycle network. | Gonzalo A. Ruz, Eric Goles Ch. |
| 2012 | ICMLA | Building Synthetic Networks of the Budding Yeast Cell-Cycle Using Swarm Intelligence. | Gonzalo A. Ruz, Tania Timmermann, Eric Goles Ch. |
| 2010 | ICMLA | Learning Gene Regulatory Networks with Predefined Attractors for Sequential Updating Schemes Using Simulated Annealing. | Gonzalo A. Ruz, Eric Goles Ch. |