| 2023 | ICDE | HyperMinHash: MinHash in LogLog Space (Extended Abstract). | Yun William Yu, Griffin M. Weber |
| 2022 | AMIA | Informatics for Integrating Biology and the Bedside (i2b2) in 2022: Single Sign On and Synthetic Data. | Jeffrey G. Klann, Michael Mendis, Kevin Bui, Griffin M. Weber, Diane Keogh, Shawn N. Murphy |
| 2022 | AMIA | i2b2 Modern UI to Achieve Unified i2b2/SHRINE User Experience. | Anupama Maram, Nick Benik, Griffin M. Weber, Jeffrey G. Klann |
| 2021 | AMIA | Integrating Informatics for Integrating Biology and the Bedside with tranSMART: Flexible Data Warehousing with Complex Analytics. | Jeffrey G. Klann, Michael Mendis, Peter Rice, Rudy Potenzone, Louisa May Klann, Griffin M. Weber, Diane Keogh, Shawn N. Murphy |
| 2021 | AMIA | Combining Chart Review and Hospital System Dynamics for Electronic Health Record Phenotyping in an International COVID-19 Research Network. | Jeffrey G. Klann, Griffin M. Weber, Emma Perez, William Yuan, Gabriel A. Brat, Shawn N. Murphy |
| 2020 | AMIA | National Informatics Infrastructure Responding to the COVID-19 Pandemic. | Douglas MacFadden, Shawn N. Murphy, Griffin M. Weber, Anupama Maram |
| 2020 | AMIA | Accrual to Clinical Trials (ACT) - a SHRINE User Interface Refresh to Search for 125+ Million Lives. | Anupama Maram, Griffin M. Weber |
| 2020 | PSB | Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data. | Andrew L. Beam, Benjamin Kompa, Allen Schmaltz, Inbar Fried, Griffin M. Weber, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane |
| 2019 | AMIA | Ten Years of CTSA Outputs and Moving Forward: How We Succeeded, What We Learned, and Moving Forward in the Open Science Environment. | Juliane Schneider, Kristi L. Holmes, Marc Ciriello, Griffin M. Weber, Diane Keogh |
| 2017 | AMIA | Real-Time Queries of Millions of Patients Using Probabilistic Sketches. | Griffin M. Weber |
| 2014 | AMIA | Profiles Research Networking Software: An Open Source Community. | Griffin M. Weber |
| 2013 | AMIA | Harvard Faculty Finder: Research Networking Across a University. | Griffin M. Weber |
| 2012 | AMIA | Harvard Catalyst Profiles: Finding collaborators outside biomedicine. | Griffin M. Weber |
| 2002 | AMIA | Building an asynchronous web-based tool for machine learning classification. | Griffin M. Weber, Staal Amund Vinterbo, Lucila Ohno-Machado |
| 2001 | AMIA | International Training in Medical Informatics: The Second Year of the Brazil/USA Project. | Vishwanath Anantraman, Griffin M. Weber, Hamish Fraser, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Lucila Ohno-Machado |