| 2025 | MICCAI | Phenotype Representation and Analysis via Discriminative Atypicality (PRADA) to Capture the Structural Heterogeneity of Autism Spectrum Disorder. | Emre Onemli, Ahsan Mahmood, Omar Azrak, Dea Garic, Meghan R. Swanson, Rebecca Grzadzinski, Kattia Mata, Mark D. Shen, Jessica B. Girault, Tanya St. John, Juhi Pandey, Lonnie Zwaigenbaum, Annette M. Estes, Audrey M. Shen, Stephen R. Dager, Robert T. Schultz, Kelly N. Botteron, Alan C. Evans, Jed T. Elison, Essa Yacoub, Sun Hyung Kim, Robert C. McKinstry, Guido Gerig, Heather Cody Hazlett, Natasha Marrus, Joseph Piven, John R. Pruett Jr., Martin Styner |
| 2024 | CVPR | Relightful Harmonization: Lighting-Aware Portrait Background Replacement. | Mengwei Ren, Wei Xiong, Jae Shin Yoon, Zhixin Shu, Jianming Zhang, Hyunjoon Jung, Guido Gerig, He Zhang |
| 2023 | ICCV | Multiscale Structure Guided Diffusion for Image Deblurring. | Mengwei Ren, Mauricio Delbracio, Hossein Talebi, Guido Gerig, Peyman Milanfar |
| 2023 | MICCAI | Microscopy Image Segmentation via Point and Shape Regularized Data Synthesis. | Shijie Li, Mengwei Ren, Thomas Ach, Guido Gerig |
| 2023 | MICCAI | SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. | Jared Vicory, Ye Han, Juan Carlos Prieto, David Allemang, Mathieu Leclercq, Connor Bowley, Harald Scheirich, Jean-Christophe Fillion-Robin, Stephen M. Pizer, James Fishbaugh, Guido Gerig, Martin Styner, Beatriz Paniagua |
| 2022 | MICCAI | ContraReg: Contrastive Learning of Multi-modality Unsupervised Deformable Image Registration. | Neel Dey, Jo Schlemper, Seyed Sadegh Mohseni Salehi, Bo Zhou, Guido Gerig, Michal Sofka |
| 2021 | ICCV | Generative Adversarial Registration for Improved Conditional Deformable Templates. | Neel Dey, Mengwei Ren, Adrian V. Dalca, Guido Gerig |
| 2021 | MICCAI | Q-space Conditioned Translation Networks for Directional Synthesis of Diffusion Weighted Images from Multi-modal Structural MRI. | Mengwei Ren, Heejong Kim, Neel Dey, Guido Gerig |
| 2020 | MICCAI | Self-supervised Denoising via Diffeomorphic Template Estimation: Application to Optical Coherence Tomography. | Guillaume Gisbert, Neel Dey, Hiroshi Ishikawa, Joel S. Schuman, James Fishbaugh, Guido Gerig |
| 2020 | MICCAI | Hierarchical Geodesic Modeling on the Diffusion Orientation Distribution Function for Longitudinal DW-MRI Analysis. | Heejong Kim, Sungmin Hong, Martin Styner, Joseph Piven, Kelly N. Botteron, Guido Gerig |
| 2020 | MICCAI | Multi-modal Perceptual Adversarial Learning for Longitudinal Prediction of Infant MR Images. | Liying Peng, Lanfen Lin, Yusen Lin, Yue Zhang, Roza M. Vlasova, Juan Prieto, Yen-Wei Chen, Guido Gerig, Martin Styner |
| 2020 | MICCAI | Trajectories from Distribution-Valued Functional Curves: A Unified Wasserstein Framework. | Anuja Sharma, Guido Gerig |
| 2019 | MICCAI | Robust Non-negative Tensor Factorization, Diffeomorphic Motion Correction, and Functional Statistics to Understand Fixation in Fluorescence Microscopy. | Neel Dey, Jeffrey Messinger, R. Theodore Smith, Christine A. Curcio, Guido Gerig |
| 2019 | MICCAI | Spatiotemporal Modeling for Image Time Series with Appearance Change: Application to Early Brain Development. | James Fishbaugh, Martin Styner, Karen Grewen, John H. Gilmore, Guido Gerig |
| 2019 | MICCAI | Hierarchical Multi-geodesic Model for Longitudinal Analysis of Temporal Trajectories of Anatomical Shape and Covariates. | Sungmin Hong, James Fishbaugh, Jason J. Wolff, Martin A. Styner, Guido Gerig |
| 2018 | MICCAI | 4D Continuous Medial Representation Trajectory Estimation for Longitudinal Shape Analysis. | Sungmin Hong, James Fishbaugh, Guido Gerig |
| 2018 | MICCAI | Analysis of Morphological Changes of Lamina Cribrosa Under Acute Intraocular Pressure Change. | Mathilde Ravier, Sungmin Hong, Charly Girot, Hiroshi Ishikawa, Jenna Tauber, Gadi Wollstein, Joel S. Schuman, James Fishbaugh, Guido Gerig |
| 2018 | MICCAI | SlicerSALT: Shape AnaLysis Toolbox. | Jared Vicory, Laura Pascal, Pablo Hernandez, James Fishbaugh, Juan-Carlos Prieto, Mahmoud Mostapha, Chao Huang, Hina Shah, Jun-Pyo Hong, Zhiyuan Liu, Loic Michoud, Jean-Christophe Fillion-Robin, Guido Gerig, Hongtu Zhu, Stephen M. Pizer, Martin Styner, Beatriz Paniagua |
| 2017 | MICCAI | Data-Driven Rank Aggregation with Application to Grand Challenges. | James Fishbaugh, Marcel Prastawa, Bo Wang, Patrick Reynolds, Stephen R. Aylward, Guido Gerig |
| 2017 | MICCAI | Spatiotemporal Analysis of Structural Changes of the Lamina Cribrosa. | Charly Girot, Hiroshi Ishikawa, James Fishbaugh, Gadi Wollstein, Joel S. Schuman, Guido Gerig |
| 2017 | MICCAI | Longitudinal Modeling of Multi-modal Image Contrast Reveals Patterns of Early Brain Growth. | Avantika Vardhan, James Fishbaugh, Clement Vachet, Guido Gerig |
| 2014 | MICCAI | Diffeomorphic Shape Trajectories for Improved Longitudinal Segmentation and Statistics. | Prasanna Muralidharan, James Fishbaugh, Hans J. Johnson, Stanley Durrleman, Jane S. Paulsen, Guido Gerig, P. Thomas Fletcher |
| 2014 | MICCAI | Subject-Specific Prediction Using Nonlinear Population Modeling: Application to Early Brain Maturation from DTI. | Neda Sadeghi, P. Thomas Fletcher, Marcel Prastawa, John H. Gilmore, Guido Gerig |
| 2014 | MICCAI | Joint Longitudinal Modeling of Brain Appearance in Multimodal MRI for the Characterization of Early Brain Developmental Processes. | Avantika Vardhan, Marcel Prastawa, Neda Sadeghi, Clement Vachet, Joseph Piven, Guido Gerig |
| 2013 | MICCAI | Modeling 4D Changes in Pathological Anatomy Using Domain Adaptation: Analysis of TBI Imaging Using a Tumor Database. | Bo Wang, Marcel Prastawa, Avishek Saha, Suyash P. Awate, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, Valerio Pascucci, Guido Gerig |
| 2012 | MICCAI | Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy. | Manasi Datar, Prasanna Muralidharan, Abhishek Kumar, Sylvain Gouttard, Joseph Piven, Guido Gerig, Ross T. Whitaker, P. Thomas Fletcher |
| 2012 | MICCAI | Topology Preserving Atlas Construction from Shape Data without Correspondence Using Sparse Parameters. | Stanley Durrleman, Marcel Prastawa, Julie R. Korenberg, Sarang C. Joshi, Alain Trouv, Guido Gerig |
| 2012 | MICCAI | Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling. | James Fishbaugh, Marcel Prastawa, Stanley Durrleman, Joseph Piven, Guido Gerig |
| 2011 | MICCAI | Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data. | James Fishbaugh, Stanley Durrleman, Guido Gerig |
| 2010 | MICCAI | Image Registration Driven by Combined Probabilistic and Geometric Descriptors. | Linh K. Ha, Marcel Prastawa, Guido Gerig, John H. Gilmore, Cludio T. Silva, Sarang C. Joshi |
| 2009 | CVPR | Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. | Feng Shi, Pew-Thian Yap, Yong Fan, Jie-Zhi Cheng, Lawrence L. Wald, Guido Gerig, Weili Lin, Dinggang Shen |
| 2009 | MICCAI | Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging. | Manasi Datar, Joshua E. Cates, P. Thomas Fletcher, Sylvain Gouttard, Guido Gerig, Ross T. Whitaker |
| 2009 | MICCAI | Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. | Stanley Durrleman, Xavier Pennec, Alain Trouv, Guido Gerig, Nicholas Ayache |
| 2009 | MICCAI | Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties. | Sylvain Gouttard, Marcel Prastawa, Elizabeth Bullitt, Weili Lin, Casey Goodlett, Guido Gerig |
| 2008 | CVPR | Multivariate nonlinear mixed model to analyze longitudinal image data: MRI study of early brain development. | Shun Xu, Martin Styner, John H. Gilmore, Joseph Piven, Guido Gerig |
| 2008 | ISVC | Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures. | Andriy Fedorov, Eric Billet, Marcel Prastawa, Guido Gerig, Alireza Radmanesh, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides |
| 2008 | ISVC | Brain Lesion Segmentation through Physical Model Estimation. | Marcel Prastawa, Guido Gerig |
| 2008 | MICCAI | Group Statistics of DTI Fiber Bundles Using Spatial Functions of Tensor Measures. | Casey Goodlett, P. Thomas Fletcher, John H. Gilmore, Guido Gerig |
| 2008 | MICCAI | Assessment of Reliability of Multi-site Neuroimaging Via Traveling Phantom Study. | Sylvain Gouttard, Martin Styner, Marcel Prastawa, Joseph Piven, Guido Gerig |
| 2007 | CVPR | Statistical Shape Analysis of Multi-Object Complexes. | Kevin Gorczowski, Martin Styner, Ja-Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig |
| 2007 | MICCAI | Quantification of Measurement Error in DTI: Theoretical Predictions and Validation. | Casey Goodlett, P. Thomas Fletcher, Weili Lin, Guido Gerig |
| 2007 | MICCAI | Probabilistic Fiber Tracking Using Particle Filtering. | Fan Zhang, Casey Goodlett, Edwin R. Hancock, Guido Gerig |
| 2006 | MICCAI | Improved Correspondence for DTI Population Studies Via Unbiased Atlas Building. | Casey Goodlett, Brad Davis, Remi Jean, John H. Gilmore, Guido Gerig |
| 2005 | MICCAI | Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. | Isabelle Corouge, P. Thomas Fletcher, Sarang C. Joshi, John H. Gilmore, Guido Gerig |
| 2005 | MICCAI | Effects of Healthy Aging Measured By Intracranial Compartment Volumes Using a Designed MR Brain Database. | Bndicte Mortamet, Donglin Zeng, Guido Gerig, Marcel Prastawa, Elizabeth Bullitt |
| 2005 | MICCAI | Synthetic Ground Truth for Validation of Brain Tumor MRI Segmentation. | Marcel Prastawa, Elizabeth Bullitt, Guido Gerig |
| 2004 | MICCAI | Determining Malignancy of Brain Tumors by Analysis of Vessel Shape. | Elizabeth Bullitt, Inkyung Jung, Keith E. Muller, Guido Gerig, Stephen R. Aylward, Sarang C. Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend |
| 2004 | MICCAI | A Statistical Shape Model of Individual Fiber Tracts Extracted from Diffusion Tensor MRI. | Isabelle Corouge, Sylvain Gouttard, Guido Gerig |
| 2004 | MICCAI | Profile Scale-Spaces for Multiscale Image Match. | Sean Ho, Guido Gerig |
| 2004 | MICCAI | Multi-class Posterior Atlas Formation via Unbiased Kullback-Leibler Template Estimation. | Peter Lorenzen, Brad Davis, Guido Gerig, Elizabeth Bullitt, Sarang C. Joshi |
| 2004 | MICCAI | Automatic Segmentation of Neonatal Brain MRI. | Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig |
| 2003 | MICCAI | Vascular Attributes and Malignant Brain Tumors. | Elizabeth Bullitt, Guido Gerig, Stephen R. Aylward, Sarang C. Joshi, J. Keith Smith, Matthew G. Ewend, Weili Lin |
| 2003 | MICCAI | Analysis Tool for Diffusion Tensor MRI. | Pierre Fillard, Guido Gerig |
| 2003 | MICCAI | Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths. | Pierre Fillard, John H. Gilmore, Joseph Piven, Weili Lin, Guido Gerig |
| 2003 | MICCAI | Age and Treatment Related Local Hippocampal Changes in Schizophrenia Explained by a Novel Shape Analysis Method. | Guido Gerig, Keith E. Muller, Emily O. Kistner, Yueh-Yun Chi, Miranda Chakos, Martin Styner, Jeffrey A. Lieberman |
| 2003 | MICCAI | Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI. | Guido Gerig, Marcel Prastawa, Weili Lin, John H. Gilmore |
| 2003 | MICCAI | Robust Estimation for Brain Tumor Segmentation. | Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig |
| 2003 | MICCAI | Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia. | Martin Styner, Jeffrey A. Lieberman, Guido Gerig |
| 2003 | MICCAI | Caudate Shape Discrimination in Schizophrenia Using Template-Free Non-parametric Tests. | Y. Sampath K. Vetsa, Martin Styner, Stephen M. Pizer, Jeffrey A. Lieberman, Guido Gerig |
| 2002 | ICPR | Level-Set Evolution with Region Competition: Automatic 3-D Segmentation of Brain Tumors. | Sean Ho, Elizabeth Bullitt, Guido Gerig |
| 2002 | ICPR | Model-Based Brain and Tumor Segmentation. | Nathan Moon, Elizabeth Bullitt, Koen Van Leemput, Guido Gerig |
| 2002 | MICCAI | Automatic Brain and Tumor Segmentation. | Nathan Moon, Elizabeth Bullitt, Koen Van Leemput, Guido Gerig |
| 2001 | CVPR | Three-Dimensional Medial Shape Representation Incorporating Object Variability. | Martin Styner, Guido Gerig |
| 2001 | MICCAI | Valmet: A New Validation Tool for Assessing and Improving 3D Object Segmentation. | Guido Gerig, Matthieu Jomier, Miranda Chakos |
| 2001 | MICCAI | Shape versus Size: Improved Understanding of the Morphology of Brain Structures. | Guido Gerig, Martin Styner, Martha Elizabeth Shenton, Jeffrey A. Lieberman |
| 1998 | MICCAI | Motion Measurements in Low-Contrast X-ray Imagery. | Martin Berger, Guido Gerig |
| 1998 | MICCAI | Detecting and Inferring Brain Activation from Functional MRI by Hypothesis-Testing Based on the Likelihood Ratio. | Dimitrios Ekatodramis, Gbor Szkely, Guido Gerig |
| 1998 | MICCAI | Exploring the Discrimination Power of the Time Domain for Segmentation and Characterization of Lesions in Serial MR Data. | Guido Gerig, Daniel Welti, Charles R. G. Guttmann, Alan C. F. Colchester, Gbor Szkely |
| 1995 | ICCV | Multiscale Detection of Curvilinear Structures in 2D and 3D Image Data. | Thomas Koller, Guido Gerig, Gbor Szkely, Daniel Dettwiler |
| 1993 | CAIP | Analysis of MR Angiography Volume Data Leading to the Structural Description of the Cerebral Vessel Tree. | Gbor Szkely, Guido Gerig, Thomas Koller, Christian Brechbhler, Olaf Kbler |