| 2025 | MABS | Insects and Agents: Extending the Metaphor. | H. Van Dyke Parunak |
| 2023 | MABS | Learning Agent Goal Structures by Evolution. | H. Van Dyke Parunak |
| 2021 | MABS | Social Simulation for Non-hackers. | H. Van Dyke Parunak |
| 2013 | MABS | Dynamically Tracking the Real World in an Agent-Based Model. | H. Van Dyke Parunak, S. Hugh Brooks, Sven Brueckner, Ravi Gupta |
| 2012 | MABS | Swarming Estimation of Realistic Mental Models. | H. Van Dyke Parunak, Sven Brueckner, Elizabeth Downs, Laura Sappelsa |
| 2011 | MABS | Between Agents and Mean Fields. | H. Van Dyke Parunak |
| 2010 | MABS | Pheromones, Probabilities, and Multiple Futures. | H. Van Dyke Parunak |
| 2009 | MABS | Stigmergic Modeling of Hierarchical Task Networks. | H. Van Dyke Parunak, Theodore C. Belding, Robert Bisson, Sven Brueckner, Elizabeth Downs, Rainer Hilscher, Keith S. Decker |
| 2009 | WSC | Interpreting Digital Pheromones as Probability Fields. | H. Van Dyke Parunak |
| 2008 | MABS | Understanding Collective Cognitive Convergence. | H. Van Dyke Parunak, Theodore C. Belding, Rainer Hilscher, Sven A. Brueckner |
| 2007 | MABS | E Pluribus Unum: Polyagent and Delegate MAS Architectures. | H. Van Dyke Parunak, Sven Brueckner, Danny Weyns, Tom Holvoet, Paul Verstraete, Paul Valckenaers |
| 2006 | MABS | Concurrent Modeling of Alternative Worlds with Polyagents. | H. Van Dyke Parunak, Sven Brueckner |
| 1998 | MABS | Agent-Based Modeling vs. Equation-Based Modeling: A Case Study and Users' Guide. | H. Van Dyke Parunak, Robert Savit, Rick L. Riolo |
| 1997 | AAAI | Distributed Component-Centered Design as Agent-Based Distributed Constraint Optimization. | H. Van Dyke Parunak, Allen C. Ward, Mitchell Fleischer, John A. Sauter, Tzyy-Chuh Chang |
| 1995 | ISADS | The living factory: applications of artificial life to manufacturing. | Bill Fulkerson, H. Van Dyke Parunak |
| 1987 | AAAI | Material Handling: A Conservative Domain for Neural Connectivity and Propagation. | H. Van Dyke Parunak, James Kindrick, Bruce W. Irish |