| 2019 | AMIA | Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. | Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier |
| 2019 | PSB | Translational informatics of population Health: How large biomolecular and clinical datasets unite. | Yves A. Lussier, Atul J. Butte, Haiquan Li, Rong Chen, Jason H. Moore |
| 2019 | PSB | Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. | Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier |
| 2018 | PSB | Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements. | Jiali Han, Jianrong Li, Ikbel Achour, Lorenzo L. Pesce, Ian T. Foster, Haiquan Li, Yves A. Lussier |
| 2014 | AMIA | COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. | Young Ji Lee, Andrew D. Boyd, Jianrong Li, Vincent Gardeux, Colleen Kenost, Donald Saner, Haiquan Li, Ivo L. Abraham, Jerry A. Krishnan, Yves A. Lussier |
| 2013 | PSB | Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data. | Alan Perez-Rathke, Haiquan Li, Yves A. Lussier |
| 2012 | AMIA | Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients. | Xinan Yang, Haiquan Li, Kelly Regan, Jianrong Li, Yong Huang, H. Rosie Xing, Yves A. Lussier |
| 2006 | AAAI | Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. | Jinyan Li, Haiquan Li, Limsoon Wong, Jian Pei, Guozhu Dong |
| 2005 | CIS | Self-organization Evolution of Supply Networks: System Modeling and Simulation Based on Multi-agent. | Gang Li, Linyan Sun, Ping Ji, Haiquan Li |
| 2005 | PODS | Relative risk and odds ratio: a data mining perspective. | Haiquan Li, Jinyan Li, Limsoon Wong, Mengling Feng, Yap-Peng Tan |
| 2004 | PSB | Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data. | Haiquan Li, Jinyan Li, Soon-Heng Tan, See-Kiong Ng |