| 2019 | CVPR | Multiscale Kernels for Enhanced U-Shaped Network to Improve 3D Neuron Tracing. | Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Heng Huang, Mei Chen, Hanchuan Peng, Weidong Cai |
| 2019 | ICDM | Learning Hierarchical and Shared Features for Improving 3D Neuron Reconstruction. | Hao Yuan, Na Zou, Shaoting Zhang, Hanchuan Peng, Shuiwang Ji |
| 2018 | DICTA | Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images. | Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Rong Gao, Hanchuan Peng, Weidong Cai |
| 2017 | MICCAI | Triple-Crossing 2.5D Convolutional Neural Network for Detecting Neuronal Arbours in 3D Microscopic Images. | Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai |
| 2016 | MICCAI | Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding. | Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Hanchuan Peng, Joe Z. Tsien, Tianming Liu |
| 2011 | RECOMB | Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets. | Hanchuan Peng, Fuhui Long |
| 2010 | MICCAI | Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching. | Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng |
| 2008 | RECOMB | Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. | Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers |
| 2005 | KDD | Finding cliques in protein interaction networks via transitive closure of a weighted graph. | Chris H. Q. Ding, Xiaofeng He, Hanchuan Peng |
| 2004 | RECOMB | Comparing | Hanchuan Peng, Eugene W. Myers |
| 2003 | ICDM | Structure Search and Stability Enhancement of Bayesian Networks. | Hanchuan Peng, Chris H. Q. Ding |
| 2001 | KDD | A Bayesian Learning Algorithm of Discrete Variables for Automatically Mining Irregular Features of Pattern Images. | Hanchuan Peng, Fuhui Long |
| 2000 | CEC | A hierarchical distributed genetic algorithm for image segmentation. | Hanchuan Peng, Fuhui Long, Zheru Chi, Wanchi Su |
| 2000 | ICIP | Document Image Matching Based on Component Blocks. | Hanchuan Peng, Fuhui Long, Wan-Chi Siu, Zheru Chi, David Dagan Feng |
| 1999 | IJCNN | Approaching the post nonlinearity of blind mixtures by hybrid neural network. | Hanchuan Peng, Zheru Chi |