| 2014 | CISIS | Transcriptome Data Visualization in Pathways with Application to Zebrafish Embryo Datasets. | Chien-Ming Chen, Kuan Jung Lai, Tun-Wen Pai, Hao-Teng Chang |
| 2013 | CISIS | Mining Polymorphic SSRs from Individual Genome Sequences. | Yu-Lun Lu, Chien-Ming Chen, Tun-Wen Pai, Hao-Teng Chang |
| 2013 | SIGGRAPH | 3D reconstruction of intricate objects using planar cast shadows. | Tzung-Han Lin, Hao-Teng Chang, Shang-Jen Hu |
| 2011 | CISIS | An Atomatic Fundus Image Analysis System for Clinical Diagnosis of Glaucoma. | Chih-Yin Ho, Tun-Wen Pai, Hao-Teng Chang, Hsin-Yi Chen |
| 2011 | CISIS | A Hybrid Method of Propensity Scales and Support Vector Machine in a Linear Epitope Prediction. | Hsin-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Pei-Wen Tsai, Hao-Teng Chang |
| 2010 | CISIS | Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3. | Hao-Teng Chang, Chung-Hsiao Chao, Yu-Fong Lin, Louis J. Tseng, Tun-Wen Pai, Tsan-Huang Shih, Margaret Dah-Tsyr Chang, Pei-Wen Tsai |
| 2009 | CISIS | B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics. | Wei-Kuo Wu, Wei-Chun Chung, Hao-Teng Chang, Ron-Shan Cheng, Tun-Wen Pai |
| 2005 | APBC | Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. | Hao-Teng Chang, Tan-Chi Fan, Margaret Dah-Tsyr Chang, Tun-Wen Pai, Bo-Han Su, Pei-Chih Wu |