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Harun Mustafa

Publication record assembled from the DBLP archive of ranked conferences.

Papers indexed

7

Venues

4

Active years

2019–2026

Best venue rank

A*

Where they publish

Papers

7 indexed papers, newest first.

YearVenueTitleAuthors
2026HPCASAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis.Nika Mansouri-Ghiasi, Talu Gloglu, Harun Mustafa, Can Firtina, Konstantina Koliogeorgi, Konstantinos Kanellopoulos, Haiyu Mao, Rakesh Nadig, Mohammad Sadrosadati, Jisung Park, Onur Mutlu
2026ISCAGRAINS: Enabling High-Performance and Low-Cost Graph-Based Genome Analysis via Storage-Aware Algorithm-Architecture Co-Design.Nika Mansouri-Ghiasi, Harun Mustafa, Talu Gloglu, Rakesh Nadig, Konstantina Koliogeorgi, Susana Rebolledo Ruiz, Marc Rautmann, Furkan Eris, Mohammad Sadrosadati, Jisung Park, Onur Mutlu
2024ISCAMegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing.Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Harun Mustafa, Arvid Gollwitzer, Can Firtina, Julien Eudine, Haiyu Mao, Jol Lindegger, Meryem Banu Cavlak, Mohammed Alser, Jisung Park, Onur Mutlu
2022ASPLOSGenStore: a high-performance in-storage processing system for genome sequence analysis.Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu
2022RECOMBLossless Indexing with Counting de Bruijn Graphs.Mikhail Karasikov, Harun Mustafa, Gunnar Rtsch, Andr Kahles
2020RECOMBAStarix: Fast and Optimal Sequence-to-Graph Alignment.Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, Andr Kahles, Gunnar Rtsch, Martin T. Vechev
2019RECOMBSparse Binary Relation Representations for Genome Graph Annotation.Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rtsch, Andr Kahles