| 2025 | ICML | CLIMB: Data Foundations for Large Scale Multimodal Clinical Foundation Models. | Wei Dai, Peilin Chen, Malinda Lu, Daniel Li, Haowen Wei, Hejie Cui, Paul Pu Liang |
| 2024 | ACL | Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models. | Ran Xu, Hejie Cui, Yue Yu, Xuan Kan, Wenqi Shi, Yuchen Zhuang, May Dongmei Wang, Wei Jin, Joyce C. Ho, Carl Yang |
| 2024 | KDD | TACCO: Task-guided Co-clustering of Clinical Concepts and Patient Visits for Disease Subtyping based on EHR Data. | Ziyang Zhang, Hejie Cui, Ran Xu, Yuzhang Xie, Joyce C. Ho, Carl Yang |
| 2023 | AAAI | Neighborhood-Regularized Self-Training for Learning with Few Labels. | Ran Xu, Yue Yu, Hejie Cui, Xuan Kan, Yanqiao Zhu, Joyce C. Ho, Chao Zhang, Carl Yang |
| 2023 | ACL | PV2TEA: Patching Visual Modality to Textual-Established Information Extraction. | Hejie Cui, Rongmei Lin, Nasser Zalmout, Chenwei Zhang, Jingbo Shang, Carl Yang, Xian Li |
| 2023 | KDD | R-Mixup: Riemannian Mixup for Biological Networks. | Xuan Kan, Zimu Li, Hejie Cui, Yue Yu, Ran Xu, Shaojun Yu, Zilong Zhang, Ying Guo, Carl Yang |
| 2022 | CIKM | On Positional and Structural Node Features for Graph Neural Networks on Non-attributed Graphs. | Hejie Cui, Zijie Lu, Pan Li, Carl Yang |
| 2022 | ECIR | How Can Graph Neural Networks Help Document Retrieval: A Case Study on CORD19 with Concept Map Generation. | Hejie Cui, Jiaying Lu, Yao Ge, Carl Yang |
| 2022 | KDD | Data-Efficient Brain Connectome Analysis via Multi-Task Meta-Learning. | Yi Yang, Yanqiao Zhu, Hejie Cui, Xuan Kan, Lifang He, Ying Guo, Carl Yang |
| 2022 | MICCAI | Interpretable Graph Neural Networks for Connectome-Based Brain Disorder Analysis. | Hejie Cui, Wei Dai, Yanqiao Zhu, Xiaoxiao Li, Lifang He, Carl Yang |
| 2022 | SDM | Structure-Enhanced Heterogeneous Graph Contrastive Learning. | Yanqiao Zhu, Yichen Xu, Hejie Cui, Carl Yang, Qiang Liu, Shu Wu |
| 2019 | MICCAI | Pulmonary Vessel Segmentation Based on Orthogonal Fused U-Net++ of Chest CT Images. | Hejie Cui, Xinglong Liu, Ning Huang |
| 2018 | ICBC | A Method to Predict the Performance and Storage of Executing Contract for Ethereum Consortium-Blockchain. | Huijuan Zhang, Chengxin Jin, Hejie Cui |