| 2022 | CIBCB | Length-Based Substructure Mutation Policies for Improved RNA Design in Simulated Annealing. | Ryan McBride, Herbert H. Tsang |
| 2021 | CEC | SIMARD-LinearFold: Long Sequence RNA Design with Simulated Annealing. | Ryan McBride, Herbert H. Tsang |
| 2021 | ISI | Differences in Geographic Profiles When Using Street Routing Versus Manhattan Distances in Buffer Zone Radii Calculations. | Stefano Z. Stamato, Andrew J. Park, Brian Eng, Valerie Spicer, Herbert H. Tsang, D. Kim Rossmo |
| 2020 | CEC | Examination of Annealing Schedules for RNA Design. | Ryan McBride, Herbert H. Tsang |
| 2019 | ICVS | A Comparison of Computational Intelligence Techniques for Real-Time Discrete Multivariate Time Series Classification of Conducting Gestures. | Justin van Heek, Gideon Woo, Jack Park, Herbert H. Tsang |
| 2016 | CEC | Examining the annealing schedules for RNA design algorithm. | Halid Emre Erhan, Sinem Sav, Stas Kalashnikov, Herbert H. Tsang |
| 2015 | ICDM | A Decision Support System for Crowd Control Using Agent-Based Modeling and Simulation. | Andrew J. Park, Herbert H. Tsang, Shawn Buckley, Hector C. Alzate Ramirez, Valerie Spicer |
| 2013 | CIBCB | A study on the effect of different thermodynamic models for predicting pseudoknotted RNA secondary structures. | Peter Grypma, Jonathan Babbitt, Herbert H. Tsang |
| 2011 | CEC | Modeling HIV spread through sexual contact using a cellular automaton. | Azadeh Alimadad, Vahid Dabbaghian, Suraj K. Singh, Herbert H. Tsang |
| 2011 | CEC | RNADPCompare: An algorithm for comparing RNA secondary structures based on image processing techniques. | Herbert H. Tsang, Christian Jacob |
| 2010 | CEC | A study of RNA secondary structure prediction using different mutation operators. | Herbert H. Tsang, Tiancheng Jiang, Kay C. Wiese, Christian Jacob |
| 2010 | ISI | GENIUS: A computational modeling framework for counter-terrorism planning and response. | Herbert H. Tsang, Andrew J. Park, Mengting Sun, Uwe Glsser |
| 2009 | CIBCB | rnaDesign: Local search for RNA secondary structure design. | Denny C. Dai, Herbert H. Tsang, Kay C. Wiese |
| 2009 | CIBCB | SARNA-ensemble-predict: The effect of different dissimilarity metrics on a novel ensemble-based RNA secondary structure prediction algorithm. | Herbert H. Tsang, Kay C. Wiese |
| 2008 | CIBCB | SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots. | Herbert H. Tsang, Kay C. Wiese |
| 2007 | CEC | The significance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing. | Herbert H. Tsang, Kay C. Wiese |
| 2007 | CIBCB | SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules. | Herbert H. Tsang, Kay C. Wiese |
| 2006 | CIBCB | SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction. | Herbert H. Tsang, Kay C. Wiese |