| 2012 | ALIFE | Design and construction of a prototype CMY (Cyan-Magenta-Yellow) genetic circuit as a mutational readout device to measure evolutionary stability dynamics and determine design principles for robust synthetic systems. | Sean C. Sleight, Herbert M. Sauro |
| 2012 | ICCAD | Modeling and design automation of biological circuits and systems. | Natasa Miskov-Zivanov, James R. Faeder, Chris J. Myers, Herbert M. Sauro |
| 2006 | WSC | SBW - a modular framework for systems biology. | Frank T. Bergmann, Herbert M. Sauro |
| 2006 | WSC | Innovation in software for systems biology: is there any? | Herbert M. Sauro |
| 2006 | WSC | Challenges for modeling and simulation methods in systems biology. | Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strmbck, John J. Tyson |
| 2006 | WSC | Complexity reduction of biochemical networks. | Ravishankar Rao Vallabhajosyula, Herbert M. Sauro |
| 2002 | PSB | The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology. | Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano |