| 2016 | IGARSS | Sand dam dynamic monitoring in coastal areas based on time-series remote sensing images. | Heshan Lin, Jinyan Xu, Degang Jiang, Yikang Gao, Lianhuan Wei, Jianhui Liu |
| 2013 | CCGRID | Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures. | Jing Zhang, Heshan Lin, Pavan Balaji, Wu-chun Feng |
| 2013 | GLOBECOM | Massive distributed and parallel log analysis for organizational security. | Xiaokui Shu, John Smiy, Danfeng (Daphne) Yao, Heshan Lin |
| 2013 | HPCC | Consolidating Applications for Energy Efficiency in Heterogeneous Computing Systems. | Jing Zhang, Hao Wang, Heshan Lin, Wu-chun Feng |
| 2012 | CCGRID | Transparent Accelerator Migration in a Virtualized GPU Environment. | Shucai Xiao, Pavan Balaji, James Dinan, Qian Zhu, Rajeev Thakur, Susan Coghlan, Heshan Lin, Gaojin Wen, Jue Hong, Wu-chun Feng |
| 2011 | CLUSTER | Performance Characterization and Optimization of Atomic Operations on AMD GPUs. | Marwa K. Elteir, Heshan Lin, Wu-chun Feng |
| 2011 | ICPADS | StreamMR: An Optimized MapReduce Framework for AMD GPUs. | Marwa K. Elteir, Heshan Lin, Wu-chun Feng, Tom Scogland |
| 2011 | ICPADS | Optimizing Dynamic Programming on Graphics Processing Units via Adaptive Thread-Level Parallelism. | Chao-Chin Wu, Jenn-Yang Ke, Heshan Lin, Wu-chun Feng |
| 2011 | SC | Poster: characterizing the impact of memory-access techniques on AMD fusion. | Kenneth S. Lee, Heshan Lin, Wu-chun Feng |
| 2011 | SIMULTECH | Evaluating Performance Optimizations of Large-scale Genomic Sequence Search Applications using SST/macro. | Tae-Hyuk Ahn, Damian Dechev, Heshan Lin, Helgi Adalsteinsson, Curtis L. Janssen |
| 2010 | HPDC | MOON: MapReduce On Opportunistic eNvironments. | Heshan Lin, Xiaosong Ma, Jeremy S. Archuleta, Wu-chun Feng, Mark K. Gardner, Zhe Zhang |
| 2010 | ICPADS | Enhancing MapReduce via Asynchronous Data Processing. | Marwa K. Elteir, Heshan Lin, Wu-chun Feng |
| 2008 | HPDC | Semantic-based distributed i/o with the paramedic framework. | Pavan Balaji, Wu-chun Feng, Heshan Lin |
| 2008 | PPoPP | Semantics-based distributed I/O for mpiBLAST. | Pavan Balaji, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Rajkumar Kettimuthu, Rajeev Thakur, Xiaosong Ma |
| 2008 | SC | Massively parallel genomic sequence search on the Blue Gene/P architecture. | Heshan Lin, Pavan Balaji, Ruth Poole, Carlos P. Sosa, Xiaosong Ma, Wu-chun Feng |
| 2008 | SSDBM | Adaptive Request Scheduling for Parallel Scientific Web Services. | Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova |
| 2006 | HPDC | Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim. | Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma, Alok N. Choudhary |
| 2006 | SC | Grid applications - Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications. | Mark K. Gardner, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Xiaosong Ma |