| 2019 | SC | Accelerating the Performance of Modal Aerosol Module of E3SM Using OpenACC. | Hongzhang Shan, Zhengji Zhao, Marcus Wagner |
| 2018 | SC | Improving MPI Reduction Performance for Manycore Architectures with OpenMP and Data Compression. | Hongzhang Shan, Samuel Williams, Calvin W. Johnson |
| 2017 | OOPSLA | Performance analysis and optimization of the RAMPAGE metal alloy potential generation software. | Philip C. Roth, Hongzhang Shan, David Riegner, Nikolas Antolin, Sarat Sreepathi, Leonid Oliker, Samuel Williams, Shirley Moore, Wolfgang Windl |
| 2016 | SC | Experiences of Applying One-Sided Communication to Nearest-Neighbor Communication. | Hongzhang Shan, Samuel Williams, Yili Zheng, Weiqun Zhang, Bei Wang, Stphane Ethier, Zhengji Zhao |
| 2015 | PPoPP | Thread-level parallelization and optimization of NWChem for the Intel MIC architecture. | Hongzhang Shan, Samuel Williams, Wibe de Jong, Leonid Oliker |
| 2015 | SC | Parallel implementation and performance optimization of the configuration-interaction method. | Hongzhang Shan, Samuel Williams, Calvin W. Johnson, Kenneth S. McElvain, W. Erich Ormand |
| 2013 | SC | Performance Tuning of Fock Matrix and Two-Electron Integral Calculations for NWChem on Leading HPC Platforms. | Hongzhang Shan, Brian Austin, Wibe de Jong, Leonid Oliker, Nicholas J. Wright, Edoardo Apr |
| 2010 | HPCC | Developing a Parameterized Performance Proxy for Sequential Scientific Kernels. | Hongzhang Shan, Erich Strohmaier |
| 2008 | SC | Characterizing and predicting the I/O performance of HPC applications using a parameterized synthetic benchmark. | Hongzhang Shan, Katie Antypas, John Shalf |
| 2008 | SC | Linearly scaling 3D fragment method for large-scale electronic structure calculations. | Lin-Wang Wang, Byounghak Lee, Hongzhang Shan, Zhengji Zhao, Juan C. Meza, Erich Strohmaier, David H. Bailey |
| 2007 | SC | Investigation of leading HPC I/O performance using a scientific-application derived benchmark. | Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan |
| 2006 | ICPP | Performance Analysis of a High Energy Colliding Beam Simulation Code on Four HPC Architectures. | Hongzhang Shan, Ji Qiang, Erich Strohmaier, Katherine A. Yelick |
| 2006 | SC | Particles and contiuum - Performance modeling and optimization of a high energy colliding beam simulation code. | Hongzhang Shan, Erich Strohmaier, Ji Qiang, David H. Bailey, Katherine A. Yelick |
| 2005 | EuroPar | Apex-Map: A Synthetic Scalable Benchmark Probe to Explore Data Access Performance on Highly Parallel Systems. | Erich Strohmaier, Hongzhang Shan |
| 2005 | SC | Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. | Erich Strohmaier, Hongzhang Shan |
| 2004 | ICS | Performance characteristics of the Cray X1 and their implications for application performance tuning. | Hongzhang Shan, Erich Strohmaier |
| 2004 | MASCOTS | Architecture Independent Performance Characterization and Benchmarking for Scientific Applications. | Erich Strohmaier, Hongzhang Shan |
| 2003 | SC | Job Superscheduler Architecture and Performance in Computational Grid Environments. | Hongzhang Shan, Leonid Oliker, Rupak Biswas |
| 2000 | SC | A Comparison of Three Programming Models for Adaptive Applications on the Origin2000. | Hongzhang Shan, Jaswinder Pal Singh, Leonid Oliker, Rupak Biswas |
| 1999 | ICS | A comparison of MPI, SHMEM and cache-coherent shared address space programming models on the SGI Origin2000. | Hongzhang Shan, Jaswinder Pal Singh |
| 1999 | SC | Parallel Sorting on Cache-coherent DSM Multiprocessors. | Hongzhang Shan, Jaswinder Pal Singh |
| 1997 | PPoPP | Application Restructuring and Performance Portability on Shared Virtual Memory and Hardware-Coherent Multiprocessors. | Dongming Jiang, Hongzhang Shan, Jaswinder Pal Singh |