| 2026 | AIME | Sequential Counterfactual Inference for Temporal Clinical Data: Addressing the Time Traveler Dilemma. | Jingya Cheng, Alaleh Azhir, Jiazi Tian, Hossein Estiri |
| 2022 | AMIA | A Deductive Data-Driven Pipeline Powered by MLHO for Post-Acute Sequelae of COVID-19 (PASC) Phenotyping. | Arianna Dagliati, Zachary H. Strasser, Rebecca Mesa, Zahra Shakeri, Alaleh Azhir, Riccardo Bellazzi, Shawn N. Murphy, Hossein Estiri |
| 2022 | AMIA | Machine Learning to Identify Respiratory Sequelae in Patients with COVID-19. | Zachary H. Strasser, Hossein Estiri, Shawn Murphy |
| 2021 | AMIA | Addressing Bias in the Application of Machine Learning on Real-World Data. | Hossein Estiri, Yuan Luo, Hongfang Liu, Suzanne Tamang, Harold P. Lehmann |
| 2021 | AMIA | Temporal Phenotypic Pathways of Post-Acute Sequelae of SARS-CoV-2 by an International Consortium for Clinical Characterization of COVID-19 (4CE). | Shawn N. Murphy, Hossein Estiri, Arianna Dagliati, Riccardo Bellazzi, John H. Holmes |
| 2021 | AMIA | A Machine Learning Approach for Identifying Emergent Phenotypes Associated with a Previous COVID Infection. | Zachary H. Strasser, Hossein Estiri, Shawn N. Murphy |
| 2020 | AIME | Transitive Sequential Pattern Mining for Discrete Clinical Data. | Hossein Estiri, Sebastien Vasey, Shawn N. Murphy |
| 2020 | AMIA | Generative Transfer Learning for Measuring Plausibility of EHR Diagnosis Records Over Time. | Hossein Estiri, Sebastien Vasey, Jeffrey G. Klann, Victor M. Castro, Shawn N. Murphy |
| 2020 | AMIA | High-throughput Phenotyping with EHR Sequences. | Shawn N. Murphy, Hossein Estiri, Zachary H. Strasser, Kavishwar B. Wagholikar, Victor M. Castro |
| 2019 | AMIA | EHR Sequencing: A Novel Approach for Constructing Predictive and Interpretable Data Representations from EHR Data. | Hossein Estiri, Thomas H. McCoy, Shawn N. Murphy |
| 2019 | AMIA | Ontologies Enabling Computable Tables. | Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Matthew A. Joss, Hossein Estiri, Kavishwar B. Wagholikar, Shawn N. Murphy |
| 2017 | AMIA | Social Determinants of Health: Applied Informatics Approaches Incorporating Context into Care. | Michael Cantor, Hossein Estiri, Rachel Gold, Theresa Cullen |
| 2017 | AMIA | Applying unsupervised learning to characterize rare observations in clinical data: the DQe-p tool. | Hossein Estiri, Jeffrey G. Klann, Kavishwar B. Wagholikar, Shawn N. Murphy |