| 2025 | CIBCB | Integrative Framework for Functional analysis of multiple Traditional Chinese Medicines based on transcriptome-driven systems biology and supervised learning strategy. | Yun Tang, Chia-Ru Chung, Hsi-Yuan Huang, Yang-Chi-Dung Lin, Hua-Li Zuo, Jing Li, Liping Li, Siyao Hu, Hsiao-Chin Hong, Fei Wang, Jinrui Bai, Hsien-Da Huang |
| 2018 | BIBE | Mutation Analysis of Second Primary Tumors in the Head and Neck Cancer by Next Generation Sequencing. | Ting-Yuan Liu, Chien-Chin Lee, Hsi-Yuan Huang, Jan-Gowth Chang |
| 2016 | BIBE | Establish Reporting Format of Gene Related Rare-Diseases by Exome Sequencing in the Clinical Medical Laboratory. | Cheng-Mao Ho, Hsi-Yuan Huang, Chin-An Yang, Ya-Sian Chang, Chien-Yu Lin, Jan-Gowth Chang |
| 2016 | BIBE | An Integrative Analysis for Cancer Studies. | Hsi-Yuan Huang, Chien-Yu Lin, Chin-An Yang, Cheng-Mao Ho, Ya-Sian Chang, Jan-Gowth Chang |
| 2005 | GECCO | Primer design for multiplex PCR using a genetic algorithm. | Feng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng |