| 2022 | CoNEXT | How gullible are web measurement tools?: a case study analysing and strengthening OpenWPM's reliability. | Benjamin Krumnow, Hugo Jonker, Stefan Karsch |
| 2022 | RAID | Elysium: Context-Aware Bytecode-Level Patching to Automatically Heal Vulnerable Smart Contracts. | Christof Ferreira Torres, Hugo Jonker, Radu State |
| 2021 | IMC | HLISA: towards a more reliable measurement tool. | Daniel Goen, Hugo Jonker, Stefan Karsch, Benjamin Krumnow, David Roefs |
| 2020 | CCS | GIS: Shielding Vulnerable Smart Contracts Against Attacks. | Christof Ferreira Torres, Mathis Baden, Robert Norvill, Beltran Borja Fiz Pontiveros, Hugo Jonker, Sjouke Mauw |
| 2019 | CCS | GIS: Smart Shielding of Smart Contracts. | Christof Ferreira Torres, Mathis Baden, Robert Norvill, Hugo Jonker |
| 2019 | ESORICS | Fingerprint Surface-Based Detection of Web Bot Detectors. | Hugo Jonker, Benjamin Krumnow, Gabry Vlot |
| 2018 | ESORICS | Investigating Fingerprinters and Fingerprinting-Alike Behaviour of Android Applications. | Christof Ferreira Torres, Hugo Jonker |
| 2014 | FUN | Secure Auctions without Cryptography. | Jannik Dreier, Hugo Jonker, Pascal Lafourcade |
| 2013 | CCS | Defining verifiability in e-auction protocols. | Jannik Dreier, Hugo Jonker, Pascal Lafourcade |
| 2013 | ESORICS | Enforcing Privacy in the Presence of Others: Notions, Formalisations and Relations. | Naipeng Dong, Hugo Jonker, Jun Pang |
| 2012 | ESORICS | Formal Analysis of Privacy in an eHealth Protocol. | Naipeng Dong, Hugo Jonker, Jun Pang |
| 2010 | ICICS | Anonymity and Verifiability in Voting: Understanding (Un)Linkability. | Lucie Langer, Hugo Jonker, Wolter Pieters |
| 2010 | INDOCRYPT | Versatile Prt Voter: Handling Multiple Election Methods with a Unified Interface. | Zhe Xia, Chris Culnane, James Heather, Hugo Jonker, Peter Y. A. Ryan, Steve A. Schneider, Sriramkrishnan Srinivasan |