| 2026 | ISIT | On the Capacity of Noisy Frequency-based Channels. | Yuval Gerzon, Ilan Shomorony, Nir Weinberger |
| 2025 | AISTATS | Dynamic DBSCAN with Euler Tour Sequences. | Seiyun Shin, Ilan Shomorony, Peter Macgregor |
| 2025 | ISIT | Fragmentation in Data Deduplication Systems II: The Jump Metric. | Yun-Han Li, Jin Sima, Ilan Shomorony, Olgica Milenkovic |
| 2025 | ISIT | Fragmentation in Data Deduplication Systems I: The Stretch Metric. | Yun-Han Li, Jin Sima, Ilan Shomorony, Olgica Milenkovic |
| 2025 | ISIT | Guaranteed Recovery of Unambiguous Clusters. | Kayvon Mazooji, Ilan Shomorony |
| 2024 | CISS | An Instance-Based Approach to the Trace Reconstruction Problem. | Kayvon Mazooji, Ilan Shomorony |
| 2024 | ICML | Faster Maximum Inner Product Search in High Dimensions. | Mo Tiwari, Ryan Kang, Jaeyong Lee, Donghyun Lee, Christopher Piech, Sebastian Thrun, Ilan Shomorony, Martin Jinye Zhang |
| 2024 | ISIT | Capacity of Frequency-based Channels: Encoding Information in Molecular Concentrations. | Yuval Gerzon, Ilan Shomorony, Nir Weinberger |
| 2023 | ALT | Adaptive Power Method: Eigenvector Estimation from Sampled Data. | Seiyun Shin, Han Zhao, Ilan Shomorony |
| 2023 | ISIT | Fundamental Limits of Multiple Sequence Reconstruction from Substrings. | Kel Levick, Ilan Shomorony |
| 2023 | ISIT | Finding a Burst of Positives via Nonadaptive Semiquantitative Group Testing. | Yun-Han Li, Ryan Gabrys, Jin Sima, Ilan Shomorony, Olgica Milenkovic |
| 2023 | ISIT | Substring Density Estimation from Traces. | Kayvon Mazooji, Ilan Shomorony |
| 2023 | ISIT | On Constant-Weight Binary B2-Sequences. | Jin Sima, Yun-Han Li, Ilan Shomorony, Olgica Milenkovic |
| 2023 | ISIT | Fundamental Limits of Reference-Based Sequence Reordering. | Nir Weinberger, Ilan Shomorony |
| 2022 | CISS | Achieving the Capacity of a DNA Storage Channel with Linear Coding Schemes. | Kel Levick, Reinhard Heckel, Ilan Shomorony |
| 2022 | ISIT | Fundamental Limits of Multi-Sample Flow Graph Decomposition. | Kayvon Mazooji, Sreeram Kannan, William Stafford Noble, Ilan Shomorony |
| 2022 | ISIT | Capacity of the Shotgun Sequencing Channel. | Aditya Narayan Ravi, Alireza Vahid, Ilan Shomorony |
| 2022 | SACMAT | A Game-Theoretically Optimal Defense Paradigm against Traffic Analysis Attacks using Multipath Routing and Deception. | Masoumeh Abolfathi, Ilan Shomorony, Alireza Vahid, Jafar Haadi Jafarian |
| 2021 | ISIT | Capacity of the Torn Paper Channel with Lost Pieces. | Aditya Narayan Ravi, Alireza Vahid, Ilan Shomorony |
| 2021 | ISIT | Sketching and Sequence Alignment: A Rate-Distortion Perspective. | Ilan Shomorony, Govinda M. Kamath |
| 2020 | GLOBECOM | Communicating over the Torn-Paper Channel. | Ilan Shomorony, Alireza Vahid |
| 2020 | ICASSP | Capacity of the Erasure Shuffling Channel. | Seiyun Shin, Reinhard Heckel, Ilan Shomorony |
| 2020 | ITW | Private DNA Sequencing: Hiding Information in Discrete Noise. | Kayvon Mazooji, Roy Dong, Ilan Shomorony |
| 2020 | RECOMB | Spectral Jaccard Similarity: A New Approach to Estimating Pairwise Sequence Alignments. | Tavor Z. Baharav, Govinda M. Kamath, David N. C. Tse, Ilan Shomorony |
| 2019 | ISIT | Capacity Results for the Noisy Shuffling Channel. | Ilan Shomorony, Reinhard Heckel |
| 2019 | ITW | The Metagenomic Binning Problem: Clustering Markov Sequences. | Grant Greenberg, Ilan Shomorony |
| 2017 | ISIT | Fundamental limits of DNA storage systems. | Reinhard Heckel, Ilan Shomorony, Kannan Ramchandran, David N. C. Tse |
| 2016 | ISIT | Overlap-based genome assembly from variable-length reads. | Joseph Hui, Ilan Shomorony, Kannan Ramchandran, Thomas A. Courtade |
| 2016 | ISIT | Partial DNA assembly: A rate-distortion perspective. | Ilan Shomorony, Govinda M. Kamath, Fei Xia, Thomas A. Courtade, David N. C. Tse |
| 2015 | ISIT | Do read errors matter for genome assembly? | Ilan Shomorony, Thomas A. Courtade, David N. C. Tse |
| 2014 | ISIT | A generalized cut-set bound for deterministic multi-flow networks and its applications. | Ilan Shomorony, Amir Salman Avestimehr |
| 2013 | ISIT | Network compression: Worst-case analysis. | Himanshu Asnani, Ilan Shomorony, Amir Salman Avestimehr, Tsachy Weissman |
| 2013 | ISIT | On efficient min-cut approximations in half-duplex relay networks. | Ral H. Etkin, Farzad Parvaresh, Ilan Shomorony, Amir Salman Avestimehr |
| 2013 | ITW | Operational extremality of Gaussianity in network compression, communication, and coding. | Himanshu Asnani, Ilan Shomorony, Amir Salman Avestimehr, Tsachy Weissman |
| 2012 | ISIT | Is Gaussian noise the worst-case additive noise in wireless networks? | Ilan Shomorony, Amir Salman Avestimehr |
| 2012 | ISIT | Bounds on the minimum energy-per-bit for bursty traffic in diamond networks. | Ilan Shomorony, Ral H. Etkin, Farzad Parvaresh, Amir Salman Avestimehr |
| 2012 | ITW | On the role of deterministic models in K K K wireless networks. | Ilan Shomorony, Amir Salman Avestimehr |
| 2012 | ITW | Worst-case source for distributed compression with quadratic distortion. | Ilan Shomorony, Amir Salman Avestimehr, Himanshu Asnani, Tsachy Weissman |
| 2011 | ISIT | Sum degrees-of-freedom of two-unicast wireless networks. | Ilan Shomorony, Amir Salman Avestimehr |