| 2022 | AMIA | An Unsupervised Cluster Analysis of Post-COVID-19 Mental Health Outcomes and Associated Comorbidities. | Katherine A. Brown, Indra Neil Sarkar, Karen Crowley, Dilum P. Aluthge, Elizabeth S. Chen |
| 2021 | AMIA | Clinical Note Section Detection Using a Hidden Markov Model of Unified Medical Language System Semantic Types. | Aaron S. Eisman, Katherine A. Brown, Elizabeth S. Chen, Indra Neil Sarkar |
| 2021 | AMIA | Public Health Informatics in a Global Pandemic: In the COVID response trenches. | Jessica D. Tenenbaum, Theresa Cullen, Indra Neil Sarkar, Philip R. O. Payne, Brian E. Dixon |
| 2020 | AMIA | Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. | Katherine A. Brown, Indra Neil Sarkar, Elizabeth S. Chen |
| 2020 | AMIA | Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures. | Aaron S. Eisman, Nishant R. Shah, Carsten Eickhoff, George Zerveas, Elizabeth S. Chen, Wen-Chih Wu, Indra Neil Sarkar |
| 2020 | AMIA | Coding Free-Text Chief Complaints from a Health Information Exchange: A Preliminary Study. | Sotiris Karagounis, Indra Neil Sarkar, Elizabeth S. Chen |
| 2020 | AMIA | A Phylogenetic Approach to Analyze the Conservativeness of BRCA1 and BRCA2 Mutations. | Jiaying Lai, Indra Neil Sarkar |
| 2018 | AMIA | Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD. | Sukrit S. Jain, Indra Neil Sarkar, Paul Stey, Rajsavi S. Anand, Dustin R. Biron, Elizabeth S. Chen |
| 2018 | AMIA | Predicting Thromboembolism after Vaginal and Laparoscopic Hysterectomy in Gynecologic Oncology Patients using Machine Learning. | Justin E. Kleiner, Michael Cohen, Dilum P. Aluthge, Ishan Sinha, Indra Neil Sarkar, Elizabeth S. Chen, Dario R. Roque |
| 2018 | AMIA | Predicting the Costs of Medical Liability Using Artificial Neural Networks. | Jonathan T. Vu, Dilum P. Aluthge, Ishan Sinha, Elizabeth S. Chen, Indra Neil Sarkar |
| 2018 | PSB | Identifying natural health product and dietary supplement information within adverse event reporting systems. | Vivekanand Sharma, Indra Neil Sarkar |
| 2017 | AMIA | An Automated System for Categorizing Transthoracic Echocardiography Indications According to the Echocardiography Appropriate Use Criteria. | Aaron S. Eisman, Rory B. Weiner, Elizabeth S. Chen, Paul Stey, Rishi K. Wadhera, Aaron P. Kithcart, Indra Neil Sarkar |
| 2017 | AMIA | Comorbidity Miner: An Open Source Interactive Tool for Mining Disparate Electronic Health Data Sources. | Ashley S. Lee, Indra Neil Sarkar, Genevieve B. Melton, Yuanqing Liu, Vivekanand Sharma, Elizabeth S. Chen |
| 2017 | AMIA | Harnessing Biomedical Natural Language Processing Tools to Identify Medicinal Plant Knowledge from Historical Texts. | Vivekanand Sharma, Wayne Law, Michael J. Balick, Indra Neil Sarkar |
| 2017 | AMIA | Assessing Data Quality within Health Information Exchanges: A Case Study for Supporting Emergency Department Research. | Margaret M. Thorsen, Indra Neil Sarkar, Elizabeth S. Chen, Elaine Fontaine, Gregory Walker, Megan L. Ranney |
| 2016 | AMIA | New Pathways Into Biomedical Informatics: Educational Outreach Programs for High School Students. | David Boone, John T. Finnell, Kim M. Unertl, Indra Neil Sarkar |
| 2016 | AMIA | Mining and Visualizing Sequential Patterns in the Electronic Health Record: A Case Study for Asthma With and Without Mental Disorders. | Elizabeth S. Chen, Genevieve B. Melton, Mark Howison, Erik Knoll, Ashley S. Lee, Indra Neil Sarkar |
| 2016 | AMIA | Report from the ED-WG Frontline: Biomedical and Health Informatics Baccalaureate (BHIB) Course. | Saif S. Khairat, Glynda Doyle, Indra Neil Sarkar, Jeff Williamson |
| 2015 | AMIA | Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures. | Elizabeth W. Carter, Indra Neil Sarkar, Genevieve B. Melton, Elizabeth S. Chen |
| 2015 | AMIA | Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma. | Elizabeth S. Chen, Genevieve B. Melton, Richard Wasserman, Paul Rosenau, Diantha B. Howard, Indra Neil Sarkar |
| 2015 | AMIA | Surveying Problem List Perceptions and Use in the Electronic Health Record. | Darlene Peterson, Timothy E. Burdick, Joshua Cohen, Indra Neil Sarkar, Julie Lin, Dennis Plante, Elizabeth S. Chen |
| 2015 | AMIA | Automated Extraction of Substance Use Information from Clinical Texts. | Yan Wang, Elizabeth S. Chen, Serguei V. S. Pakhomov, Elliot G. Arsoniadis, Elizabeth W. Carter, Elizabeth Lindemann, Indra Neil Sarkar, Genevieve B. Melton |
| 2014 | AMIA | Examining the Use, Contents, and Quality of Free-Text Tobacco Use Documentation in the Electronic Health Record. | Elizabeth S. Chen, Elizabeth W. Carter, Indra Neil Sarkar, Tamara Winden, Genevieve B. Melton |
| 2014 | AMIA | Using Arden Syntax to Identify Registry-Eligible Very Low Birth Weight Neonates from the Electronic Health Record. | Indra Neil Sarkar, Elizabeth S. Chen, Paul Rosenau, Matthew B. Storer, Beth Anderson, Jeffrey D. Horbar |
| 2014 | AMIA | PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed. | Yucan Zhang, Indra Neil Sarkar, Elizabeth S. Chen |
| 2013 | AMIA | Development of a Comprehensive Family Health History Information Model. | Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Genevieve B. Melton |
| 2013 | AMIA | Resolving and Standardizing Providers within Administrative Data. | Indra Neil Sarkar, Elizabeth S. Chen, Steven J. Kappel |
| 2012 | AMIA | Characterizing the Use and Contents of Free-Text Family History Comments in the Electronic Health Record. | Elizabeth S. Chen, Genevieve B. Melton, Timothy E. Burdick, Paul Rosenau, Indra Neil Sarkar |
| 2012 | AMIA | Social and Behavioral History Information in Public Health Datasets. | Genevieve B. Melton, Sharad Manaktala, Indra Neil Sarkar, Elizabeth S. Chen |
| 2012 | AMIA | Mining Disease Fingerprints From Within Genetic Pathways. | Ahmed Ragab Nabhan, Indra Neil Sarkar |
| 2012 | AMIA | Determining Compound Comorbidities for Heart Failure from Hospital Discharge Data. | Indra Neil Sarkar, Elizabeth S. Chen |
| 2009 | AMIA | LigerCat: Using "MeSH Clouds" from Journal, Article, or Gene Citations to Facilitate the Identification of Relevant Biomedical Literature. | Indra Neil Sarkar, Ryan Schenk, Holly Miller, Catherine N. Norton |
| 2007 | PSB | Session Introduction. | Indra Neil Sarkar |
| 2006 | AMIA | Literature Based Discovery of Gene Clusters Using Phylogenetic Methods. | Indra Neil Sarkar, Abha Agrawal |
| 2006 | AMIA | zMedline: A Medline-Based Content Management System. | Chif N. Umejei, Indra Neil Sarkar |
| 2005 | PSB | GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. | Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier |
| 2003 | PSB | Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. | Indra Neil Sarkar, Michael N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier |
| 2002 | AMIA | An integrative model for in-silico clinical-genomics discovery science. | Yves A. Lussier, Indra Neil Sarkar, Michael Cantor |
| 2002 | AMIA | Exploring SNOMED Using Phylogenetic Analysis Tools. | Indra Neil Sarkar, Michael N. Cantor, Robert DeSalle, Yves A. Lussier |
| 2002 | AMIA | Discovering protein similarity using natural language processing. | Indra Neil Sarkar, Thomas C. Rindflesch |
| 2001 | AMIA | Knowledge Aggregation from Organized Sets (KAOS) Applied to Clinical Data. | Indra Neil Sarkar, Paul J. Planet, Robert DeSalle, David H. Figurski |