| 2017 | ICASSP | Power-law stochastic neighbor embedding. | Huan-Hsin Tseng, Issam El-Naqa, Jen-Tzung Chien |
| 2010 | ICMLA | Predicting Local Failure in Lung Cancer Using Bayesian Networks. | Jung Hun Oh, Jeffrey Craft, Rawan Al-Lozi, Manushka Vaidya, Yifan Meng, Joseph O. Deasy, Jeffrey D. Bradley, Issam El-Naqa |
| 2009 | ICMLA | Application of Machine Learning Techniques for Prediction of Radiation Pneumonitis in Lung Cancer Patients. | Jung Hun Oh, Rawan Al-Lozi, Issam El-Naqa |
| 2009 | ICMLA | Bayesian Network Learning for Detecting Reliable Interactions of Dose-Volume Related Parameters in Radiation Pneumonitis. | Jung Hun Oh, Issam El-Naqa |
| 2009 | ICMLA | Improving Clinical Relevance in Ensemble Support Vector Machine Models of Radiation Pneumonitis Risk. | Todd W. Schiller, Yixin Chen, Issam El-Naqa, Joseph O. Deasy |
| 2008 | ACSSC | Current role of PET in oncology: Potentials and challenges in the management of non-small cell lung cancer. | Phaneendra K. Yalavarthy, Daniel A. Low, Camille Noel, Zhouping Wei, Deshan Yang, Aditya P. Apte, Jeffrey D. Bradley, Joseph Deasy, Issam El-Naqa |
| 2008 | ACSSC | A fast inverse consistent deformable image registration method based on symmetric optical flow computation. | Deshan Yang, Hua Li, Daniel A. Low, Joseph O. Deasy, Issam El-Naqa |
| 2008 | ICMLA | Nonlinear Kernel-Based Approaches for Predicting Normal Tissue Toxicities. | Issam El-Naqa, Jeffrey D. Bradley, Joseph Deasy |
| 2007 | ICIP | Automated Estimation of the Biophysical Target for Radiotherapy Treatment Planning using Multimodality Image Analysis. | Issam El-Naqa, Deshan Yang, Joseph Deasy |
| 2003 | ICIP | Relevance feedback based on incremental learning for mammogram retrieval. | Issam El-Naqa, Yongyi Yang, Nikolas P. Galatsanos, Miles N. Wernick |
| 2002 | ICIP | Content-based image retrieval for digital mammography. | Issam El-Naqa, Yongyi Yang, Miles N. Wernick, Nikolas P. Galatsanos |
| 2002 | ICIP | A support vector machine approach for detection of microcalcifications in mammograms. | Issam El-Naqa, Yongyi Yang, Miles N. Wernick, Nikolas P. Galatsanos, Robert M. Nishikawa |
| 2000 | ICIP | Image Retrieval Based on Similarity Learning. | Issam El-Naqa, Miles N. Wernick, Yongyi Yang, Nikolas P. Galatsanos |