| 2005 | ISPASS | A Trace-Driven Simulator For Palm OS Devices. | Hyrum Carroll, J. Kelly Flanagan, Satish Baniya |
| 2002 | SBAC-PAD | Simulating L3 Caches in Real Time Using Hardware Accelerated Cache Simulation (HACS): A Case Study with SPECint 2000. | Myles Watson, J. Kelly Flanagan |
| 2000 | WSC | Facilitating level three cache studies using set sampling. | Niki C. Thornock, J. Kelly Flanagan |
| 2000 | WCAE | A first year computer organization course on the web: make the magic disappear. | Jeff Penfold, J. Kelly Flanagan |
| 1999 | MASCOTS | A System-Assisted Disk I/O Simulation Technique. | Franklin E. Sorenson, Elizabeth S. Sorenson, J. Kelly Flanagan, Heng Zhou |
| 1997 | PDPTA | The Chordal Spoke ATM Interconnection Network. | Mark J. Clement, Bryan S. Morse, J. Kelly Flanagan, Wei Wei, Phyllis E. Crandall |
| 1997 | WSC | A Stochastic Disk I/O Simulation Technique. | Niki C. Thornock, Xiao-Hong Tu, J. Kelly Flanagan |
| 1996 | MASCOTS | The Inaccuracy of Trace-Driven Simulation Using Incomplete Mulitprogramming Trace Data. | J. Kelly Flanagan, Brent E. Nelson, James K. Archibald, Gregory D. Thompson |
| 1996 | MASCOTS | Transaction Processing Workloads - A Comparison to the SPEC Benchmarks Using Memory Hierarchy Performance Studies. | Brent E. Nelson, Gregory D. Thompson, J. Kelly Flanagan |
| 1996 | PDPTA | Cost Optimal Analysis for Workstation Clusters. | Mark J. Clement, J. Kelly Flanagan, Michael R. Steed |
| 1995 | PDPTA | The Round Table ATM Interconnection Network. | Wei Wei, Mark J. Clement, J. Kelly Flanagan |
| 1993 | MASCOTS | Incomplete Trace Data and Trace Driven Simulation. | J. Kelly Flanagan, Brent E. Nelson, James K. Archibald, Knuth Stener Grimsrud |
| 1989 | ICASSP | Vector quantization codebook generation using simulated annealing. | J. Kelly Flanagan, Darryl Morrell, Richard L. Frost, Christopher J. Read, Brent E. Nelson |
| 1989 | ICASSP | A method for computing the DFT of vector quantized data. | Christopher J. Read, Douglas M. Chabries, Richard W. Christiansen, J. Kelly Flanagan |
| 1988 | ICCD | Processor design using path programmable logic. | J. Kelly Flanagan, Brent E. Nelson |
| 1987 | ICASSP | A multiprogrammed parallel architecture for digital signal processing. | Tao Li, Brent E. Nelson, J. Kelly Flanagan, Christopher J. Read |