| 2024 | Algosensors | Decreasing Verification Radius in Local Certification. | Laurent Feuilloley, Jan Janousek, Jan Matys Kristan, Josef Erik Sedlcek |
| 2024 | SOFSEM | Shortest Characteristic Factors of a Deterministic Finite Automaton and Computing Its Positive Position Run by Pattern Set Matching. | Jan Janousek, Stepn Plach |
| 2020 | SOFSEM | On Synchronizing Tree Automata and Their Work-Optimal Parallel Run, Usable for Parallel Tree Pattern Matching. | Stepn Plach, Jan Janousek |
| 2019 | CEC | QDSOMA: Towards the Utilization of Quantum Computing within SOMA. | Petr Gajdos, Marek Behlek, Jan Janousek, Pavel Krmer |
| 2019 | CEC | Random Key Self-Organizing Migrating Algorithm for Permutation Problems. | Pavel Krmer, Jan Janousek, Jan Platos |
| 2016 | ACIIDS | Fast Human Activity Recognition Based on a Massively Parallel Implementation of Random Forest. | Jan Janousek, Petr Gajdos, Pavel Dohnlek, Michal Radeck |
| 2015 | FedCSIS | A new algorithm for the determinisation of visibly pushdown automata. | Radomr Polch, Jan Travnicek, Jan Janousek, Borivoj Melichar |
| 2015 | ICMLA | Gaussian Mixture Model Cluster Forest. | Jan Janousek, Petr Gajdos, Michal Radeck, Vclav Snsel |
| 2015 | LATA | Backward Linearised Tree Pattern Matching. | Jan Trvncek, Jan Janousek, Borivoj Melichar, Loek G. Cleophas |
| 2014 | FedCSIS | Efficient Description and Cache Performance in Aspect-Oriented User Interface Design. | Toms Cern, Miroslav Macik, Michael J. Donahoo, Jan Janousek |
| 2014 | SMC | Clustering using artificial bee colony on CUDA. | Jan Janousek, Jan Platos, Vclav Snsel |
| 2011 | FedCSIS | Tree Indexing by Pushdown Automata and Repeats of Subtrees. | Toms Flouri, Jan Janousek, Borivoj Melichar, Costas S. Iliopoulos, Solon P. Pissis |
| 2011 | FedCSIS | Subtree Oracle Pushdown Automata for Ranked and Unranked Ordered Trees. | Martin Plicka, Jan Janousek, Borivoj Melichar |
| 2011 | FedCSIS | Nonlinear Tree Pattern Pushdown Automata. | Jan Travnicek, Jan Janousek, Borivoj Melichar |
| 2011 | SPIRE | Computing All Subtree Repeats in Ordered Ranked Trees. | Michalis Christou, Maxime Crochemore, Toms Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis |
| 2010 | SAC | Aho-Corasick like multiple subtree matching by pushdown automata. | Toms Flouri, Borivoj Melichar, Jan Janousek |
| 1997 | SOFSEM | The Output-Store Formal Translator Directed by LR Parsing. | Jan Janousek, Borivoj Melichar |