| 2020 | ICLR | Infinite-Horizon Differentiable Model Predictive Control. | Sebastian East, Marco Gallieri, Jonathan Masci, Jan Koutnk, Mark Cannon |
| 2020 | ICLR | SNODE: Spectral Discretization of Neural ODEs for System Identification. | Alessio Quaglino, Marco Gallieri, Jonathan Masci, Jan Koutnk |
| 2017 | ICML | Recurrent Highway Networks. | Julian Georg Zilly, Rupesh Kumar Srivastava, Jan Koutnk, Jrgen Schmidhuber |
| 2016 | GECCO | A Wavelet-based Encoding for Neuroevolution. | Sjoerd van Steenkiste, Jan Koutnk, Kurt Driessens, Jrgen Schmidhuber |
| 2016 | ICASSP | Lipreading with long short-term memory. | Michael Wand, Jan Koutnk, Jrgen Schmidhuber |
| 2014 | GECCO | Evolving deep unsupervised convolutional networks for vision-based reinforcement learning. | Jan Koutnk, Jrgen Schmidhuber, Faustino J. Gomez |
| 2014 | ICML | A Clockwork RNN. | Jan Koutnk, Klaus Greff, Faustino J. Gomez, Jrgen Schmidhuber |
| 2013 | FDG | Evolving large-scale neural networks for vision-based TORCS. | Jan Koutnk, Giuseppe Cuccu, Jrgen Schmidhuber, Faustino J. Gomez |
| 2013 | GECCO | Evolving large-scale neural networks for vision-based reinforcement learning. | Jan Koutnk, Giuseppe Cuccu, Jrgen Schmidhuber, Faustino J. Gomez |
| 2012 | GECCO | Complexity search for compressed neural networks. | Faustino J. Gomez, Jan Koutnk, Jrgen Schmidhuber |
| 2012 | PPSN | Compressed Network Complexity Search. | Faustino J. Gomez, Jan Koutnk, Jrgen Schmidhuber |
| 2010 | GECCO | Evolving neural networks in compressed weight space. | Jan Koutnk, Faustino J. Gomez, Jrgen Schmidhuber |
| 2009 | CEC | HyperNEAT controlled robots learn how to drive on roads in simulated environment. | Jan Drchal, Jan Koutnk, Miroslav Snorek |
| 2009 | ICANN | Combining Multiple Inputs in HyperNEAT Mobile Agent Controller. | Jan Drchal, Ondrej Kapral, Jan Koutnk, Miroslav Snorek |
| 2008 | ICANN | Temporal Hebbian Self-Organizing Map for Sequences. | Jan Koutnk, Miroslav Snorek |
| 2006 | ICANN | Self-Organizing Neural Networks for Signal Recognition. | Jan Koutnk, Miroslav Snorek |
| 2006 | PPSN | Building of 3D Environment Models for Mobile Robotics Using Self-organization. | Jan Koutnk, Roman Mzl, Miroslav Kulich |
| 2004 | IJCNN | Single categorizing and learning module for temporal sequences. | Jan Koutnk, Miroslav Snorek |
| 2003 | EUROGP | Grammatical Evolution with Bidirectional Representation. | Jir Kubalk, Jan Koutnk, Lon J. M. Rothkrantz |
| 2003 | IJCNN | Enhancement of categorizing and learning module (CALM) - embedded detection of signal change. | Jan Koutnk, Miroslav Snorek |