| 2025 | ICCCI | Retinal Blood Vessels Segmentation for ROP Plus Form Diagnosis. | Jos Almeida, Vojtech Benda, Jan Kubcek, Martin Augustynek, Marek Penhaker, Juraj Timkovic |
| 2020 | ACIIDS | Quantitative Analysis and Objective Comparison of Clustering Algorithms for Medical Image Segmentation. | Alice Krestanova, Jan Kubcek, Jiri Skandera, Dominik Vilimek, David Oczka, Marek Penhaker, Martin Augustynek, Martin Cern |
| 2020 | ACIIDS | A Proposal of Optimal Wavelet Based Smoothing for EGG Signal Trend Detection. | Jan Kubcek, Jana Kosturikova, Dominik Vilimek, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka, Daniel Barvik |
| 2020 | ACIIDS | Monitoring and Statistical Evaluation of the Effect of Outpatient Pleoptic-Orthoptic Exercises. | Pavla Monsportova, Martin Augustynek, Jaroslav Vondrk, Jan Kubcek, Dominik Vilimek, Jaromr Konecny, Juraj Timkovic |
| 2020 | ACIIDS | A Quantitative and Comparative Analysis of Edge Detectors for Biomedical Image Identification Within Dynamical Noise Effect. | Dominik Vilimek, Kristyna Kubikova, Jan Kubcek, Daniel Barvik, Marek Penhaker, Martin Cern, Martin Augustynek, David Oczka, Jaroslav Vondrk |
| 2019 | ACIIDS | A Semi-Supervised Learning Approach for Automatic Segmentation of Retinal Lesions Using SURF Blob Detector and Locally Adaptive Binarization. | Tathagata Bandyopadhyay, Jan Kubcek, Marek Penhaker, Juraj Timkovic, David Oczka, Ondrej Krejcar |
| 2019 | ACIIDS | Modeling and Extraction of Retinal Blood Vessels from RetCam 3 Based on Morphological Segmentation. | Alice Krestanova, Jan Kubcek, Juraj Timkovic, Marek Penhaker, David Oczka, Jan Vanus |
| 2019 | ACIIDS | Modeling and Features Extraction of Heel Bone Fracture Reparation Dynamical Process from X-Ray Images Based on Time Iteration Segmentation Model Driven by Gaussian Energy. | Jan Kubcek, Alice Krestanova, Iveta Bryjova, Marek Penhaker, Martin Cern, Martin Augustynek, David Oczka, Jan Vanus |
| 2019 | ACIIDS | Autonomous Segmentation and Modeling of Brain Pathological Findings Based on Iterative Segmentation from MR Images. | Jan Kubcek, Alice Krestanova, Tereza Muchova, David Oczka, Marek Penhaker, Martin Cern, Martin Augustynek, Ondrej Krejcar |
| 2019 | ACIIDS | Modeling of Articular Cartilage with Goal of Early Osteoarthritis Extraction Based on Local Fuzzy Thresholding Driven by Fuzzy C-Means Clustering. | Jan Kubcek, Alice Krestanova, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka |
| 2019 | ACIIDS | Design and Analysis of LMMSE Filter for MR Image Data. | Jan Kubcek, Alice Krestanova, Martina Polachova, David Oczka, Marek Penhaker, Martin Cern, Martin Augustynek, Ondrej Krejcar |
| 2019 | ICCCI | Detection and Modeling of Alcohol Intoxication Dynamic from IR Images Based on Clustering Driven by ABC Algorithm. | Jan Kubcek, Alice Krestanova, Marek Penhaker, David Oczka, Martin Cern, Martin Augustynek |
| 2019 | ICCCI | Using Wavelet Transformation for Prediction CO2 in Smart Home Care Within IoT for Monitor Activities of Daily Living. | Jan Vanus, Alice Krestanova, Jan Kubcek, Ojan Majidzadeh Gorjani, Marek Penhaker, David Oczka |
| 2018 | ACIIDS | Modelling and Objectification of Secondary X ray Irradiation on Skiagraphy Images in Clinical Conditions. | Jan Kubcek, Martin Augustynek, Andrea Vodakova, Marek Penhaker |
| 2018 | ACIIDS | Novel Aproach for Localization of Patients in Urgent Admission Department. | Jan Kubcek, Libor Michalek, Tomas Urbanczyk, Jaromir Konecny, Martin Tomis, Filip Benes, Jiri Svub, Pavel Stasa, Leopold Pleva |
| 2018 | ACIIDS | Multiregional Soft Segmentation Driven by Modified ABC Algorithm and Completed by Spatial Aggregation: Volumetric, Spatial Modelling and Features Extraction of Articular Cartilage Early Loss. | Jan Kubcek, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka |
| 2018 | ACIIDS | Detection and Dynamical Tracking of Temperature Facial Distribution Caused by Alcohol Intoxication with Using of Modified OTSU Regional Segmentation. | Jan Kubcek, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka, Petra Maresov |
| 2018 | ACIIDS | Analysis and Modelling of Heel Bone Fracture with Using of Active Contour Driven by Gaussian Energy and Features Extraction. | Jan Kubcek, Marek Penhaker, David Oczka, Martin Augustynek, Martin Cern, Petra Maresov |
| 2018 | HealthCom | Using the PI ProcessBook Software Tool to Monitor Room Occupancy in Smart Home Care. | Jan Vanus, Radek Martinek, Jan Kubcek, Marek Penhaker, Jan Nedoma, Marcel Fajkus |
| 2018 | ICCCI | Fuzzy Segmentation Driven by Modified ABC Algorithm Using Cartilage Features Completed by Spatial Aggregation: Modeling of Early Cartilage Loss. | Jan Kubcek, Iveta Bryjova, Marek Penhaker, David Oczka, Martin Augustynek, Martin Cern |
| 2018 | SoMeT | Analysis and Dynamical Modelling of Retinal Lesions with Using of Time Deformable Segmentation Model. | Jan Kubcek, Radovan Hudak, Juraj Timkovic, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka |
| 2018 | SoMeT | Biomedical Image Data Segmentation with Using of Clustering Driven by Genetic Algorithms. | Jan Kubcek, Marek Penhaker, Martin Augustynek, Martin Cern, David Oczka |
| 2017 | ACIIDS | Segmentation of Vascular Calcifications and Statistical Analysis of Calcium Score. | Jan Kubcek, Iveta Bryjova, Jan Valosek, Marek Penhaker, Martin Augustynek, Martin Cern, Vladimir Kasik |
| 2017 | ACIIDS | Tracking of Bone Reparation Process with Using of Periosteal Callus Extraction Based on Fuzzy C-means Algorithm. | Jan Kubcek, Marek Penhaker, Iveta Bryjova, Martin Augustynek, Tomas Zapletal, Vladimir Kasik |
| 2017 | ACIIDS | Extraction of Optical Disc Geometrical Parameters with Using of Active Snake Model with Gradient Directional Information. | Jan Kubcek, Juraj Timkovic, Marek Penhaker, Martin Augustynek, Iveta Bryjova, Vladimir Kasik |
| 2017 | ACIIDS | Breathing Movement Analysis for Adjustment of Radiotherapy Planning. | Marek Penhaker, Marketa Novakova, Jakub Knybel, Jan Kubcek, Jan Grepl, Vladimir Kasik, Tomas Zapletal |
| 2017 | CBMS | Dynamical Modelling of Pulmonary Compartment Response Using Differential Approach. | Jan Kubcek, Martin Augustynek, Marek Penhaker |
| 2017 | ICCCI | Multiregional Segmentation Modeling in Medical Ultrasonography: Extraction, Modeling and Quantification of Skin Layers and Hypertrophic Scars. | Iveta Bryjova, Jan Kubcek, Kristyna Molnarova, Lukas Peter, Marek Penhaker, Kamil Kuca |
| 2017 | ICCCI | Evaluation of Gama Analysis Results Significance Within Verification of Radiation IMRT Plans in Radiotherapy. | Jan Kubcek, Iveta Bryjova, Kamila Faltynova, Marek Penhaker, Martin Augustynek, Petra Maresov |
| 2017 | SoMeT | Segmentation Based on Gabor Transformation with Machine Learning: Modeling of Retinal Blood Vessels System from RetCam Images and Tortuosity Extraction. | Jan Kubcek, Jana Kosturikova, Marek Penhaker, Martin Augustynek, Kamil Kuca |
| 2017 | SoMeT | Automated Extraction and Modeling of Calcifications and Blood Stream Volumetric Parameters. | Jan Kubcek, Marek Penhaker, Tomas Ondraczka, Zdenek Machacek, Martin Cern, Martin Augustynek, Petra Maresov |
| 2017 | SoMeT | Time Deformable Segmentation Model Based on the Active Contour Driven by Gaussian Energy Distribution: Extraction and Modeling of Early Articular Cartilage Pathological Interuptions. | Jan Kubcek, Veronika Vicianova, Marek Penhaker, Martin Augustynek |
| 2016 | ACIIDS | Model Kidney Function in Stabilizing of Blood Pressure. | Martin Augustynek, Jan Kubcek, Martin Cern, Marie Bachrata |
| 2016 | ACIIDS | Extraction of Myocardial Fibrosis Using Iterative Active Shape Method. | Jan Kubcek, Iveta Bryjova, Marek Penhaker, Michal Kodaj, Martin Augustynek |
| 2014 | ICCCI | Articular Cartilage Defect Detection Based on Image Segmentation with Colour Mapping. | Jan Kubcek, Marek Penhaker, Iveta Bryjova, Michal Kodaj |