| 2022 | ICIP | Fast Learning from Label Proportions with Small Bags. | Denis Barucic, Jan Kybic |
| 2018 | ICIP | Benchmarking of Image Registration Methods for Differently Stained Histological Slides. | Jir Borovec, Arrate Muoz-Barrutia, Jan Kybic |
| 2018 | MICCAI | Fast Registration by Boundary Sampling and Linear Programming. | Jan Kybic, Jir Borovec |
| 2017 | MICCAI | Detection and Localization of Drosophila Egg Chambers in Microscopy Images. | Jir Borovec, Jan Kybic, Rodrigo Nava |
| 2016 | ACCV | Binary Pattern Dictionary Learning for Gene Expression Representation in Drosophila Imaginal Discs. | Jir Borovec, Jan Kybic |
| 2016 | ACCV | Langerhans Islet Volume Estimation from 3D Optical Projection Tomography. | Jan Svihlk, Jan Kybic, David Habart, Hanna Hlushak, Jir Dvork, Barbora Radochov |
| 2015 | CVPR | Fast registration of segmented images by normal sampling. | Jan Kybic, Martin Dolejsi, Jir Borovec |
| 2015 | ICIP | Automatic detection of bone marrow infiltration by multiple myeloma detection in low-dose CT. | Francisco Martinez-Martinez, Jan Kybic, Luks Lambert |
| 2015 | ICIP | Supertexton-based segmentation in early Drosophila oogenesis. | Rodrigo Nava, Jan Kybic |
| 2015 | ICIP | Geometrical graph matching using Monte Carlo tree search. | Miguel Amvel Pinheiro, Jan Kybic |
| 2015 | MICCAI | Classification of Tumor Epithelium and Stroma in Colorectal Cancer Based on Discrete Tchebichef Moments. | Rodrigo Nava, Germn Gonzlez, Jan Kybic, Boris Escalante-Ramrez |
| 2014 | CVPR | Reconstructing Evolving Tree Structures in Time Lapse Sequences. | Przemyslaw Glowacki, Miguel Amvel Pinheiro, Engin Tretken, Raphael Sznitman, Daniel Lebrecht, Jan Kybic, Anthony Holtmaat, Pascal Fua |
| 2012 | CVPR | Robust non-rigid registration of 2D and 3D graphs. | Eduard Serradell, Przemyslaw Glowacki, Jan Kybic, Francesc Moreno-Noguer, Pascal Fua |
| 2009 | ICIP | Discrete curvature calculation for fast level set segmentation. | Jan Kybic, Jakub Kratky |
| 2009 | MICCAI | Respiratory Motion Estimation from Cone-Beam Projections Using a Prior Model. | Jef Vandemeulebroucke, Jan Kybic, Patrick Clarysse, David Sarrut |
| 2008 | CVPR | Regional image similarity criteria based on the Kozachenko-Leonenko entropy estimator. | Juan D. Garca-Arteaga, Jan Kybic |
| 2006 | ECCV | Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. | Ignacio Arganda-Carreras, Carlos Oscar Snchez Sorzano, Roberto Marabini, Jos Mara Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic |
| 2006 | ECCV | Image Registration Accuracy Estimation Without Ground Truth Using Bootstrap. | Jan Kybic, Daniel Smutek |
| 2006 | ICASSP | Incremental Updating of Nearest Neighbor-Based High-Dimensional Entropy Estimation. | Jan Kybic |
| 2005 | ICIP | Quantitative analysis of microarray images. | Leila Muresan, Bettina Heise, Erich-Peter Klement, Jan Kybic |
| 2004 | ICIP | High-dimensional mutual information estimation for image registration. | Jan Kybic |
| 2001 | MICCAI | Cardiac Motion Analysis from Ultrasound Sequences Using Non-rigid Registration. | Mara J. Ledesma-Carbayo, Jan Kybic, Manuel Desco, Andrs Santos, Michael Unser |
| 2000 | ICIP | Multidimensional Elastic Registration of Images Using Splines. | Jan Kybic, Michael Unser |
| 1999 | ICIP | Compensation of Unidirectional Geometric Distortion in EPI Using Spline Warping. | Jan Kybic, Philippe Thvenaz, Michael Unser |