| 2000 | MICCAI | HeartPerfect: Data Mining in a Large Database of Myocardial Perfusion Scintigraphy. | Bernard Hotz, Jean-Philippe Thirion |
| 2000 | MICCAI | MyoTrack: A 3D Deformation Field Method to Measure Cardiac Motion from Gated SPECT. | Jean-Philippe Thirion, Serge Benayoun |
| 1998 | MICCAI | Automatic Quantification of Changes in the Volume of Brain Structures. | Guillaume Calmon, Neil Roberts, Paul Eldridge, Jean-Philippe Thirion |
| 1998 | MICCAI | Automatic Computation of Average Brain Models. | Alexandre Guimond, Jean Meunier, Jean-Philippe Thirion |
| 1998 | MICCAI | Feature-Based Registration of Medical Images: Estimation and Validation of the Pose Accuracy. | Xavier Pennec, Charles R. G. Guttmann, Jean-Philippe Thirion |
| 1998 | MICCAI | Automatic Analysis of Normal Brain Dissymmetry of Males and Females in MR Images. | Sylvain Prima, Jean-Philippe Thirion, Grard Subsol, Neil Roberts |
| 1996 | CVPR | Non-Rigid Matching Using Demons. | Jean-Philippe Thirion |
| 1995 | CAIP | Multiscale Extraction of Features from Medical Images. | Mrta Fidrich, Jean-Philippe Thirion |
| 1995 | ICCV | Validation of 3D Registration Methods Based on Points and Frames. | Xavier Pennec, Jean-Philippe Thirion |
| 1994 | CVPR | Extremal points: definition and application to 3D image registration. | Jean-Philippe Thirion |
| 1994 | ICPR | Non rigid registration for building 3D anatomical atlases. | Grard Subsol, Jean-Philippe Thirion, Nicholas Ayache |