| 2023 | MICCAI | Pick and Trace: Instance Segmentation for Filamentous Objects with a Recurrent Neural Network. | Yi Liu, Su Peng, Jeffrey Caplan, Chandra Kambhamettu |
| 2022 | ICPR | Extraction and Quantification of Actin Cytoskeleton in Microscopic Images Using a Deep Learning Based Framework and a Curve Clustering Model. | Yi Liu, Jeffrey Caplan, Chandra Kambhamettu |
| 2020 | ICIP | Quantifying Actin Filaments in Microscopic Images using Keypoint Detection Techniques and A Fast Marching Algorithm. | Yi Liu, Alexander Nedo, Kody Seward, Jeffrey Caplan, Chandra Kambhamettu |
| 2019 | CVPR | Intersection to Overpass: Instance Segmentation on Filamentous Structures With an Orientation-Aware Neural Network and Terminus Pairing Algorithm. | Yi Liu, Abhishek Kolagunda, Wayne Treible, Alex Nedo, Jeffrey Caplan, Chandra Kambhamettu |
| 2018 | ECCV | Densely Connected Stacked U-network for Filament Segmentation in Microscopy Images. | Yi Liu, Wayne Treible, Abhishek Kolagunda, Alex Nedo, Philip Saponaro, Jeffrey Caplan, Chandra Kambhamettu |
| 2017 | CVPR | DeepXScope: Segmenting Microscopy Images with a Deep Neural Network. | Philip Saponaro, Wayne Treible, Abhishek Kolagunda, Timothy Chaya, Jeffrey Caplan, Chandra Kambhamettu, Randall Wisser |
| 2017 | ICIP | Stromule branch tip detection based on accurate cell image segmentation. | Guoyu Lu, Li Ren, Jeffrey Caplan, Chandra Kambhamettu |
| 2017 | ICIP | Three-dimensional segmentation of vesicular networks of fungal hyphae in macroscopic microscopy image stacks. | Philip Saponaro, Wayne Treible, Abhishek Kolagunda, Stephen Rhein, Jeffrey Caplan, Chandra Kambhamettu, Randall Wisser |