| 2023 | IJCNN | A Robust Ensemble Regression Model for Reconstructing Genetic Networks. | Hasini Nakulugamuwa Gamage, Madhu Chetty, Suryani Lim, Jennifer Hallinan, Huy Nguyen |
| 2022 | CIBCB | Ensemble Regression Modelling for Genetic Network Inference. | Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan |
| 2022 | CIBCB | Integrating steady-state and dynamic gene expression data for improving genetic network modelling. | Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan |
| 2021 | CIBCB | An Efficient Boolean Modelling Approach for Genetic Network Inference. | Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan |
| 2021 | CIBCB | Dynamically Regulated Initialization for S-system Modelling of Genetic Networks. | Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan |
| 2021 | CIBCB | Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome. | Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan |
| 2016 | CIBCB | Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway. | James Skelton, Jennifer Hallinan, S. Park, Anil Wipat |
| 2014 | CIBCB | Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts. | Jennifer Hallinan, Owen Gilfellon, Goksel Misirli, Anil Wipat |
| 2009 | CIBCB | Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. | Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat |
| 2008 | CIBCB | Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. | Jennifer Hallinan, Anil Wipat |
| 2007 | CIBCB | Motifs and Modules in Fractured Functional Yeast Networks. | Jennifer Hallinan, Anil Wipat |
| 2006 | CEC | Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks. | Jennifer Hallinan, Daniel R. Bradley, John S. Mattick, Janet Wiles |
| 2006 | CEC | Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks. | Jennifer Hallinan, Daniel R. Bradley, Janet Wiles |
| 2006 | CIBCB | Clustering and Cross-talk in a Yeast Functional Interaction Network. | Jennifer Hallinan, Anil Wipat |
| 2005 | CIBCB | Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks. | Jennifer Hallinan, Paul T. Jackway |
| 2005 | GECCO | There's more to a model than code: understanding and formalizing | Janet Wiles, Nicholas Geard, James E. M. Watson, Kai Willadsen, John S. Mattick, Daniel R. Bradley, Jennifer Hallinan |
| 2005 | IDEAL | Evolving Neural Networks for the Classification of Malignancy Associated Changes. | Jennifer Hallinan |
| 2004 | APBC | Evolving Genetic Regulatory Networks Using an Artificial Genome. | Jennifer Hallinan, Janet Wiles |
| 2004 | CIBCB | Cluster analysis of the p53 genetic regulatory network: topology and biology. | Jennifer Hallinan |
| 2003 | KES | Self-Organization Leads to Hierarchical Modularity in an Internet Community. | Jennifer Hallinan |
| 2002 | CEC | A comparison of neutral landscapes - NK, NKp and NKq. | Nicholas Geard, Janet Wiles, Jennifer Hallinan, Bradley Tonkes, Benjamin Skellett |