| 2024 | ICLR | Evaluating Representation Learning on the Protein Structure Universe. | Arian Rokkum Jamasb, Alex Morehead, Chaitanya K. Joshi, Zuobai Zhang, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell |
| 2023 | ICMLA | Semi-Supervised Graph Learning Meets Dimensionality Reduction. | Alex Morehead, Watchanan Chantapakul, Jianlin Cheng |
| 2022 | ICLR | Geometric Transformers for Protein Interface Contact Prediction. | Alex Morehead, Chen Chen, Jianlin Cheng |
| 2019 | ICMLA | Collaborative Attentive Autoencoder for Scientific Article Recommendation. | Meshal Alfarhood, Jianlin Cheng |
| 2018 | DeSE | Localized Deep-CNN Structure for Face Recognition. | Adil Al-Azzawi, Jade Hind, Jianlin Cheng |
| 2018 | ICMLA | Localized Deep Norm-CNN Structure for Face Verification. | Adil Al-Azzawi, Hasanain Al-Sadr, Jianlin Cheng, Tony X. Han |
| 2018 | ICMLA | DeepHCF: A Deep Learning Based Hybrid Collaborative Filtering Approach for Recommendation Systems. | Meshal Alfarhood, Jianlin Cheng |
| 2012 | PSB | Session introduction. | Jianhan Chen, Jianlin Cheng, A. Keith Dunker |
| 2008 | IJCNN | A neural network approach to ordinal regression. | Jianlin Cheng, Zheng Wang, Gianluca Pollastri |
| 2005 | ISMB | Three-stage prediction of protein ?-sheets by neural networks, alignments and graph algorithms. | Jianlin Cheng, Pierre Baldi |