| 2021 | AMIA | Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. | Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson |
| 2020 | AMIA | Removing barriers to clinical text processing with MedSpaCy. | Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall |
| 2019 | AMIA | Determination of Marital Status of Patients from Structured and Unstructured Electronic Healthcare Data. | Brian T. Bucher, Jianlin Shi, Robert J. Pettit, Jeffrey P. Ferraro, Wendy W. Chapman, Adi V. Gundlapalli |
| 2019 | AMIA | Extracting Disease Onset from Family History Comments in the Electronic Health Record using Fast Healthcare Interoperability Resources. | Jianlin Shi, Kensaku Kawamoto, Wendy Kohlmann, Danielle L. Mowery, Richard L. Bradshaw, Subhadeep Deep, Wendy W. Chapman, Guilherme Del Fiol |
| 2019 | AMIA | Using Natural Language Processing to improve EHR Structured Data-based Surgical Site Infection Surveillance. | Jianlin Shi, Siru Liu, Liese C. Pruitt, Carolyn Luppens, Jeffrey P. Ferraro, Adi V. Gundlapalli, Wendy W. Chapman, Brian T. Bucher |
| 2016 | AMIA | RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. | Jianlin Shi, Danielle L. Mowery, Kristina M. Doing-Harris, John F. Hurdle |
| 2016 | AMIA | PrecMed: A collaborative environment for precision medicine research and practice. | Jianlin Shi, Lance Pflieger |
| 2015 | AMIA | POETenceph - Automatic identification of clinical notes indicating encephalopathy using a realist ontology. | Kristina Doing-Harris, Charlene R. Weir, Sean Igo, Jianlin Shi, YiJun Shao, John F. Hurdle |
| 2014 | AMIA | Online Patient Center: Expanding Patient Portals by Integrating Patient-Generated Data Directly into a Primary Care Provider's EHR Workflow. | Jon-David Ethington, Jianlin Shi, Scott D. Nelson |