| 2019 | CW | Multi-modal Recognition of Mental Workload Using Empirical Mode Decomposition and Semi-Supervised Learning. | Jianhua Zhang, Jianrong Li |
| 2019 | PSB | Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. | Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier |
| 2018 | AMIA | Systems of Phenome-Exposome Associations Unveiled by Mining Practice-Based Evidence with Environmental Exposures. | Jung-wei Fan, Samir Rachid Zaim, Walter W. Piegorsch, Jianrong Li, Colleen Kenost, Yves A. Lussier |
| 2018 | PSB | Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. | Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier |
| 2018 | PSB | Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements. | Jiali Han, Jianrong Li, Ikbel Achour, Lorenzo L. Pesce, Ian T. Foster, Haiquan Li, Yves A. Lussier |
| 2017 | ICANN | Mental Workload Classification Based on Semi-Supervised Extreme Learning Machine. | Jianrong Li, Jianhua Zhang |
| 2014 | AMIA | COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. | Young Ji Lee, Andrew D. Boyd, Jianrong Li, Vincent Gardeux, Colleen Kenost, Donald Saner, Haiquan Li, Ivo L. Abraham, Jerry A. Krishnan, Yves A. Lussier |
| 2014 | INLG | PatientNarr: Towards generating patient-centric summaries of hospital stays. | Barbara Di Eugenio, Andrew D. Boyd, Camillo Lugaresi, Abhinaya Balasubramanian, Gail M. Keenan, Mike D. Burton, Tamara Goncalves Rezende Macieira, Jianrong Li, Yves A. Lussier |
| 2013 | AMIA | HospSum: Integrating physician discharge notes with coded nursing care data to generate patient-centric summaries. | Barbara Di Eugenio, Camillo Lugaresi, Gail M. Keenan, Yves A. Lussier, Jianrong Li, Mike D. Burton, Carol Friedman, Andrew D. Boyd |
| 2012 | AMIA | Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients. | Xinan Yang, Haiquan Li, Kelly Regan, Jianrong Li, Yong Huang, H. Rosie Xing, Yves A. Lussier |
| 2007 | AMIA | Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. | Lee T. Sam, Tara Borlawsky, Ying Tao, Jianrong Li, Carol Friedman, Barry Smith, Yves A. Lussier |
| 2007 | ISMB | Information theory applied to the sparse gene ontology annotation network to predict novel gene function. | Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier |
| 2007 | PSB | Discovery of Protein Interaction Networks Shared by Diseases. | Lee T. Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves A. Lussier |
| 2005 | AMIA | Partitioning Knowledge Bases between Advanced Notification and Clinical Decision Support Systems. | Tara Borlawsky, Jianrong Li, Srikant Jalan, Edie Stern, Rose Williams, Yves A. Lussier |
| 2004 | PSB | Terminological Mapping for High Throughput Comparative Biology of Phenotypes. | Yves A. Lussier, Jianrong Li |
| 2003 | AMIA | Guideline Interaction: a study of interactions among drug-disease contraindication rules. | Te-Hui Kuo, Eneida A. Mendona, Jianrong Li, Yves A. Lussier |