| 2025 | ICCS | Accelerating Two-Dimensional k-Wave Ultrasound Simulations Through Pruned FFT: A Treatment Planning Optimisation. | Ondrej Olsak, David Bayer, Jir Jaros |
| 2025 | ICWE | KuBench: A Kubernetes-Based Environment for Standardized REST API Framework Performance Evaluation. | Ondrej Olsak, Matej Sauer, Marta Jaros, Jir Jaros |
| 2024 | CEC | Prediction of Distributed Ultrasound Simulation Execution Time U sing Machine Learning. | Jir Jaros, Marta Jaros, Martin Buchta |
| 2024 | HPCC | Accelerating Ultrasound Wave Propagation Simulations using Pruned FFT. | Ondrej Olsak, Jir Jaros |
| 2024 | HPDC | Acceleration of Ultrasound Neurostimulation Using Mixed-Precision Arithmetic. | Jir Jaros, Radek Duchon |
| 2024 | HPDC | k-Dispatch: Enabling Cost-Optimized Biomedical Workflow Offloading. | Marta Jaros, Jir Jaros |
| 2024 | HPDC | Techniques for Efficient Fourier Transform Computation in Ultrasound Simulations. | Ondrej Olsak, Jir Jaros |
| 2024 | SC | Web-Based Simulator of Superscalar RISC-V Processors. | Jir Jaros, Michal Majer, Jakub Horky, Jan Vavra |
| 2023 | GECCO | Evolutionary Optimization of a Focused Ultrasound Propagation Predictor Neural Network. | Jakub Chlebik, Jir Jaros |
| 2022 | JSSPP | Optimization of Execution Parameters of Moldable Ultrasound Workflows Under Incomplete Performance Data. | Marta Jaros, Jir Jaros |
| 2021 | GECCO | Distributed evolutionary design of HIFU treatment plans. | Jakub Chlebik, Jir Jaros |
| 2021 | JSSPP | Performance-Cost Optimization of Moldable Scientific Workflows. | Marta Jaros, Jir Jaros |
| 2021 | SMC | Distributed Evolutionary Design of High Intensity Focused Ultrasound Treatment Plans. | Jakub Chlebik, Jir Jaros |
| 2020 | JSSPP | Optimizing Biomedical Ultrasound Workflow Scheduling Using Cluster Simulations. | Marta Jaros, Dalibor Kluscek, Jir Jaros |
| 2019 | ICCS | Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation Using Pseudospectral Methods. | Filip Vaverka, Bradley E. Treeby, Jir Jaros |
| 2018 | GECCO | Design of HIFU treatment plans using an evolutionary strategy. | Marta Cudova, Bradley E. Treeby, Jir Jaros |
| 2014 | CEC | Solving the Multidimensional Knapsack Problem using a CUDA accelerated PSO. | Drahoslav Zan, Jir Jaros |
| 2014 | GECCO | GPU-accelerated evolutionary design of the complete exchange communication on wormhole networks. | Jir Jaros, Radek Tyrala |
| 2012 | CEC | Multi-GPU island-based genetic algorithm for solving the knapsack problem. | Jir Jaros |
| 2012 | PDCAT | Implementation of 3D FFTs Across Multiple GPUs in Shared Memory Environments. | Nimalan Nandapalan, Jir Jaros, Alistair P. Rendell, Bradley E. Treeby |
| 2011 | GECCO | Acceleration of grammatical evolution using graphics processing units: computational intelligence on consumer games and graphics hardware. | Petr Pospichal, Eoin Murphy, Michael O'Neill, Josef Schwarz, Jir Jaros |
| 2010 | GECCO | Evolutionary-based conflict-free scheduling of collective communications on spidergon NoCs. | Jir Jaros, Vaclav Dvorak |
| 2009 | CEC | Parallel BMDA with an aggregation of probability models. | Jir Jaros, Josef Schwarz |
| 2009 | GECCO | Evolutionary optimization of multistage interconnection networks performance. | Jir Jaros |
| 2008 | GECCO | An evolutionary design technique for collective communications on optimal diameter-degree networks. | Jir Jaros, Vaclav Dvorak |
| 2007 | CEC | Parallel BMDA with probability model migration. | Jir Jaros, Josef Schwarz |
| 2007 | GECCO | An evolutionary approach to collective communication scheduling. | Jir Jaros, Milos Ohldal, Vaclav Dvorak |
| 2007 | GECCO | Migration of probabilistic models for island-based bivariate EDA algorithm. | Josef Schwarz, Jir Jaros, Jiri Ocenasek |
| 2006 | DDECS | Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. | Jir Jaros, Vclav Dvork |