| 2008 | BIBE | Modeling gene regulation and spatial organization of sequence based motifs. | Jochen Supper, Claas aufm Kampe, Dierk Wanke, Kenneth W. Berendzen, Klaus Harter, Richard Bonneau, Andreas Zell |
| 2007 | APBC | Inferring Gene Regulatory Networks by Machine Learning Methods. | Jochen Supper, Holger Frhlich, Christian Spieth, Andreas Drger, Andreas Zell |
| 2007 | APBC | Gene Regulatory Network Inference via Regression Based Topological Refinement. | Jochen Supper, Holger Frhlich, Andreas Zell |
| 2007 | CEC | Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum. | Andreas Drger, Marcel Kronfeld, Jochen Supper, Hannes Planatscher, Jrgen B. Magnus, Marco Oldiges, Andreas Zell |
| 2007 | CEC | Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum. | Andreas Drger, Jochen Supper, Hannes Planatscher, Jrgen B. Magnus, Marco Oldiges, Andreas Zell |
| 2005 | CIBCB | Feedback Memetic Algorithms for Modeling Gene Regulatory Networks. | Christian Spieth, Felix Streichert, Jochen Supper, Nora Speer, Andreas Zell |
| 2005 | CIBCB | Reverse Engineering Non-Linear Gene Regulatory Networks Based on the Bacteriophage lambda cI Circuit. | Jochen Supper, Christian Spieth, Andreas Zell |