| 2011 | INFOCOM | Effect of buffers on stability of Internet congestion controllers. | Somayeh Sojoudi, Steven H. Low, John C. Doyle |
| 2010 | GLOBECOM | Passively Controllable Smart Antennas. | Javad Lavaei, Aydin Babakhani, Ali Hajimiri, John C. Doyle |
| 2010 | INFOCOM | Utility Functionals Associated With Available Congestion Control Algorithms. | Javad Lavaei, John C. Doyle, Steven H. Low |
| 2007 | ACC | The Statistical Mechanics of Fluctuation-Dissipation and Measurement Back Action. | Henrik Sandberg, Jean-Charles Delvenne, John C. Doyle |
| 2007 | INFOCOM | Optimization Based Rate Control for Multicast with Network Coding. | Lijun Chen, Tracey Ho, Steven H. Low, Mung Chiang, John C. Doyle |
| 2007 | SMC | Can complexity science support the engineering of critical network infrastructures? | David L. Alderson, John C. Doyle |
| 2006 | CISS | Layering As Optimization Decomposition: Current Status and Open Issues. | Mung Chiang, Steven H. Low, A. Robert Calderbank, John C. Doyle |
| 2006 | INFOCOM | Cross-Layer Congestion Control, Routing and Scheduling Design in Ad Hoc Wireless Networks. | Lijun Chen, Steven H. Low, Mung Chiang, John C. Doyle |
| 2006 | ITW | Layering As Optimization Decomposition: Framework and Examples. | Mung Chiang, Steven H. Low, A. Robert Calderbank, John C. Doyle |
| 2005 | INFOCOM | Joint congestion control and media access control design for ad hoc wireless networks. | Lijun Chen, Steven H. Low, John C. Doyle |
| 2004 | WSC | More "Normal" Than Normal: Scaling Distributions and Complex Systems. | Walter Willinger, David L. Alderson, John C. Doyle, Lun Li |
| 2002 | PSB | The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology. | Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano |