| 2026 | KDD | Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates. | Kaiyuan Gao, Yusong Wang, Haoxiang Guan, Zun Wang, Qizhi Pei, John E. Hopcroft, Kun He, Lijun Wu |
| 2023 | ICML | On the Complexity of Bayesian Generalization. | Yu-Zhe Shi, Manjie Xu, John E. Hopcroft, Kun He, Joshua B. Tenenbaum, Song-Chun Zhu, Ying Nian Wu, Wenjuan Han, Yixin Zhu |
| 2022 | CVPR | Stochastic Variance Reduced Ensemble Adversarial Attack for Boosting the Adversarial Transferability. | Yifeng Xiong, Jiadong Lin, Min Zhang, John E. Hopcroft, Kun He |
| 2021 | INFOCOM | ProHiCo: A Probabilistic Framework to Hide Communities in Large Networks. | Xuecheng Liu, Luoyi Fu, Xinbing Wang, John E. Hopcroft |
| 2020 | CVPR | Single Image Reflection Removal Through Cascaded Refinement. | Chao Li, Yixiao Yang, Kun He, Stephen Lin, John E. Hopcroft |
| 2020 | ICLR | Nesterov Accelerated Gradient and Scale Invariance for Adversarial Attacks. | Jiadong Lin, Chuanbiao Song, Kun He, Liwei Wang, John E. Hopcroft |
| 2020 | ICLR | Robust Local Features for Improving the Generalization of Adversarial Training. | Chuanbiao Song, Kun He, Jiadong Lin, Liwei Wang, John E. Hopcroft |
| 2020 | TAMC | Hidden Community Detection on Two-Layer Stochastic Models: A Theoretical Perspective. | Jialu Bao, Kun He, Xiaodong Xin, Bart Selman, John E. Hopcroft |
| 2019 | ICDE | Adaptive Wavelet Clustering for Highly Noisy Data. | Zengjian Chen, Jiayi Liu, Yihe Deng, Kun He, John E. Hopcroft |
| 2019 | ICLR | Improving the Generalization of Adversarial Training with Domain Adaptation. | Chuanbiao Song, Kun He, Liwei Wang, John E. Hopcroft |
| 2018 | ICPR | Curvature-based Comparison of Two Neural Networks. | Tao Yu, Huan Long, John E. Hopcroft |
| 2017 | CVPR | Stacked Generative Adversarial Networks. | Xun Huang, Yixuan Li, Omid Poursaeed, John E. Hopcroft, Serge J. Belongie |
| 2017 | ICLR | Snapshot Ensembles: Train 1, Get M for Free. | Gao Huang, Yixuan Li, Geoff Pleiss, Zhuang Liu, John E. Hopcroft, Kilian Q. Weinberger |
| 2016 | FAW | Nonlinear Dimension Reduction by Local Multidimensional Scaling. | Yuzhe Ma, Kun He, John E. Hopcroft, Pan Shi |
| 2016 | WWW | In a World That Counts: Clustering and Detecting Fake Social Engagement at Scale. | Yixuan Li, Oscar Martinez, Xing Chen, Yi Li, John E. Hopcroft |
| 2016 | WWW | The Lifecycle and Cascade of WeChat Social Messaging Groups. | Jiezhong Qiu, Yixuan Li, Jie Tang, Zheng Lu, Hao Ye, Bo Chen, Qiang Yang, John E. Hopcroft |
| 2015 | ICDM | Detecting Overlapping Communities from Local Spectral Subspaces. | Kun He, Yiwei Sun, David Bindel, John E. Hopcroft, Yixuan Li |
| 2015 | WWW | Uncovering the Small Community Structure in Large Networks: A Local Spectral Approach. | Yixuan Li, Kun He, David Bindel, John E. Hopcroft |
| 2012 | ADMA | Use of Supervised Learning to Predict Directionality of Links in a Network. | Sucheta Soundarajan, John E. Hopcroft |
| 2012 | ISAAC | Future Directions in Computer Science Research. | John E. Hopcroft |
| 2012 | KDD | On the separability of structural classes of communities. | Bruno D. Abrahao, Sucheta Soundarajan, John E. Hopcroft, Robert Kleinberg |
| 2012 | WWW | Using community information to improve the precision of link prediction methods. | Sucheta Soundarajan, John E. Hopcroft |
| 2012 | TAMC | On the Impact of Turing Machines. | John E. Hopcroft |
| 2011 | CIKM | Who will follow you back?: reciprocal relationship prediction. | John E. Hopcroft, Tiancheng Lou, Jie Tang |
| 2011 | ICDM | Detecting Community Kernels in Large Social Networks. | Liaoruo Wang, Tiancheng Lou, Jie Tang, John E. Hopcroft |
| 2011 | WWW | The web of topics: discovering the topology of topic evolution in a corpus. | Yookyung Jo, John E. Hopcroft, Carl Lagoze |
| 2011 | WAW | Detecting the Structure of Social Networks Using ( | Jing He, John E. Hopcroft, Hongyu Liang, Supasorn Suwajanakorn, Liaoruo Wang |
| 2010 | TAMC | New Research Directions in the Information Age. | John E. Hopcroft |
| 2010 | TAMC | Recovering Social Networks from Contagion Information. | Sucheta Soundarajan, John E. Hopcroft |
| 2010 | TAMC | Community Structure in Large Complex Networks. | Liaoruo Wang, John E. Hopcroft |
| 2008 | FAW | Computer Science in the Information Age. | John E. Hopcroft |
| 2008 | ISAAC | On the Stability of Web Crawling and Web Search. | Reid Andersen, Christian Borgs, Jennifer T. Chayes, John E. Hopcroft, Vahab S. Mirrokni, Shang-Hua Teng |
| 2007 | SODA | Spectral clustering with limited independence. | Anirban Dasgupta, John E. Hopcroft, Ravi Kannan, Pradipta Prometheus Mitra |
| 2007 | WAW | Local Computation of PageRank Contributions. | Reid Andersen, Christian Borgs, Jennifer T. Chayes, John E. Hopcroft, Vahab S. Mirrokni, Shang-Hua Teng |
| 2007 | WAW | Manipulation-Resistant Reputations Using Hitting Time. | John E. Hopcroft, Daniel Sheldon |
| 2006 | ESA | Spectral Clustering by Recursive Partitioning. | Anirban Dasgupta, John E. Hopcroft, Ravi Kannan, Pradipta Prometheus Mitra |
| 2005 | FOCS | On Learning Mixtures of Heavy-Tailed Distributions. | Anirban Dasgupta, John E. Hopcroft, Jon M. Kleinberg, Mark Sandler |
| 2005 | ICML | Error bounds for correlation clustering. | Thorsten Joachims, John E. Hopcroft |
| 2005 | PODC | Correctness of a gossip based membership protocol. | Andr Allavena, Alan J. Demers, John E. Hopcroft |
| 2004 | FOCS | Spectral Analysis of Random Graphs with Skewed Degree Distributions. | Anirban Dasgupta, John E. Hopcroft, Frank McSherry |
| 2003 | KDD | Natural communities in large linked networks. | John E. Hopcroft, Omar Khan, Brian Kulis, Bart Selman |
| 1986 | MFCS | The Promise of Electronic Prototyping. | John E. Hopcroft |
| 1982 | FOCS | Fast Parallel Matrix and GCD Computations | Allan Borodin, Joachim von zur Gathen, John E. Hopcroft |
| 1982 | FOCS | On the Movement of Robot Arms in 2-Dimensional Bounded Regions | John E. Hopcroft, Deborah Joseph, Sue Whitesides |
| 1982 | STOC | Routing, Merging and Sorting on Parallel Models of Computation (Extended Abstract) | Allan Borodin, John E. Hopcroft |
| 1980 | FOCS | Polynomial-Time Algorithms for Permutation Groups | Merrick L. Furst, John E. Hopcroft, Eugene M. Luks |
| 1978 | ICALP | The Complexity of Equivalence and Containment for Free Single Variable Program Schemes. | Steven Fortune, John E. Hopcroft, Erik Meineche Schmidt |
| 1975 | FOCS | On Time versus Space and Related Problems | John E. Hopcroft, Wolfgang J. Paul, Leslie G. Valiant |
| 1974 | STOC | Linear Time Algorithm for Isomorphism of Planar Graphs (Preliminary Report) | John E. Hopcroft, J. K. Wong |
| 1973 | STOC | On Finding Lowest Common Ancestors in Trees | Alfred V. Aho, John E. Hopcroft, Jeffrey D. Ullman |
| 1973 | STOC | Duality Applied to the Complexity of Matrix Multiplications and other Bilinear Forms | John E. Hopcroft, Jean E. Musinski |
| 1971 | FOCS | A n^5/2 Algorithm for Maximum Matchings in Bipartite Graphs | John E. Hopcroft, Richard M. Karp |
| 1969 | FOCS | Dense and Non-Dense Families of Complexity Classes | Allan Borodin, Robert L. Constable, John E. Hopcroft |
| 1969 | FOCS | Some Techniques for Proving Certain Simple Programs Optimal | John E. Hopcroft, L. R. Kerr |
| 1968 | FOCS | Two-Way Balloon Automata and AFL | Seymour Ginsburg, John E. Hopcroft |
| 1968 | FOCS | Structure of Undecidable Problems in Automata Theory | Juris Hartmanis, John E. Hopcroft |
| 1967 | FOCS | Two Results on One-Way Stack Automata | John E. Hopcroft, Jeffrey D. Ullman |
| 1967 | FOCS | An Approach to a Unified Theory of Automata | John E. Hopcroft, Jeffrey D. Ullman |
| 1967 | FOCS | Modular Decomposition of Synchronous Sequential Machines | Peter Weiner, John E. Hopcroft |
| 1966 | FOCS | Simple Deterministic Languages | A. J. Korenjak, John E. Hopcroft |