| 2010 | SERVICES | An application-centric model for cloud management. | Terence J. Harmer, Peter Wright, Christina Cunningham, John Hawkins, Ronald H. Perrott |
| 2008 | RECOMB | The Statistical Power of Phylogenetic Motif Models. | John Hawkins, Timothy L. Bailey |
| 2007 | GPC | Self Managing Middleware for Dynamic Grids. | Sachin Wasnik, Terence J. Harmer, Paul Donachy, Andrew Carson, Peter Wright, John Hawkins, Christina Cunningham, Ronald H. Perrott |
| 2006 | CEC | Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. | Mikael Bodn, John Hawkins |
| 2005 | APBC | Detecting residues in targeting peptides. | Mikael Bodn, John Hawkins |
| 2005 | CIBCB | Predicting Peroxisomal Proteins. | John Hawkins, Mikael Bodn |
| 2005 | IDEAL | Exploiting Sequence Dependencies in the Prediction of Peroxisomal Proteins. | Mark Wakabayashi, John Hawkins, Stefan Maetschke, Mikael Bodn |
| 2003 | GLOBECOM | A steady state bound for resilient packet rings. | Changcheng Huang, Harry Peng, Fengjie Yuan, John Hawkins |
| 2002 | EuroPar | An Overview of Systematic Development of Parallel Systems for Reconfigurable Hardware (Research Note). | John Hawkins, Ali E. Abdallah |
| 2001 | AICCSA | A Generic Functional Genetic Algorithm. | John Hawkins, Ali E. Abdallah |
| 1991 | SIGUCCS | The evolving support toolbox or redistributed support. | John Hawkins |