| 2020 | AMIA | Clinical Terminology Mapping Experiences in Migrating Clinical Data between Electronic Health Record Systems. | Sarita Keni, John Kilbourne |
| 2019 | AMIA | One-Way and Round-Trip Analysis Demonstrates Surprising Limitations of Standards-Based Terminology Maps. | Steven H. Brown, Loren Stevenson, Daniel Territo, Jonathan R. Nebeker, Michael J. Lincoln, John Kilbourne, Holly Miller |
| 2012 | AMIA | Towards Secure, Efficient and Standards-Based Medication Information Exchange between Patients and Physicians on Mobile Devices. | Kelly Zeng, Wei Ma, Andrew Rickert, Soma Lanka, John Kilbourne, Chris Hui, Stuart J. Nelson |
| 2007 | AMIA | Use of RxNorm to Exchange Codified Drug Allergy Information between Department of Veterans Affairs (VA) and Department of Defense (DoD). | Pradnya Warnekar, Omar Bouhaddou, Fola Parrish, Nhan Do, John Kilbourne, Steven H. Brown, Michael J. Lincoln |
| 2006 | AMIA | RxNav: A Web Service for Standard Drug Information. | Kelly Zeng, Olivier Bodenreider, John Kilbourne, Stuart J. Nelson |
| 2006 | AMIA | RxNav: Providing Standard Drug Information. | Kelly Zeng, Olivier Bodenreider, John Kilbourne, Stuart J. Nelson |
| 2003 | AMIA | Unicode, UTF-8, ASCII, and SNOMED CT | John Kilbourne, Tim Williams |
| 2002 | AMIA | Constructing a Non-human Subset in SNOMED CT. | John Kilbourne, Joshua Schraeder, Corey B. Smith |