| 2025 | AISTATS | Legitimate ground-truth-free metrics for deep uncertainty classification scoring. | Arthur Pignet, Chiara Regniez, John Klein |
| 2025 | MICCAI | Robust Sensitivity Control in Digital Pathology via Tile Score Distribution Matching. | Arthur Pignet, John Klein, Genevive Robin, Antoine Olivier |
| 2022 | ICASSP | SODA: Self-Organizing Data Augmentation in Deep Neural Networks Application to Biomedical Image Segmentation Tasks. | Arnaud Deleruyelle, John Klein, Cristian Versari |
| 2021 | ICASSP | Block Kalman Filter: An Asymptotic Block Particle Filter in the Linear Gaussian Case. | Rui Min, Christelle Garnier, Franois Septier, John Klein |
| 2020 | ESEM | A Survey on the Interplay between Software Engineering and Systems Engineering during SoS Architecting. | Hctor Cadavid, Vasilios Andrikopoulos, Paris Avgeriou, John Klein |
| 2017 | ICSA | Using Stakeholder Preferences to Make Better Architecture Decisions. | Neil A. Ernst, John Klein, George Mathew, Tim Menzies |
| 2017 | RE | "SHORT"er Reasoning About Larger Requirements Models. | George Mathew, Tim Menzies, Neil A. Ernst, John Klein |
| 2016 | ICSE | A reference architecture for big data systems in the national security domain. | John Klein, Ross Buglak, David Blockow, Troy Wuttke, Brenton Cooper |
| 2015 | BigData | Application-Specific Evaluation of No SQL Databases. | John Klein, Ian Gorton, Neil A. Ernst, Patrick Donohoe, Kim Pham, Chrisjan Matser |
| 2013 | ICSE | System-of-systems platform scoping. | John Klein, John D. McGregor |
| 2012 | RE | An early look at defining variability requirements for system of systems platforms. | John Klein, Gary J. Chastek, Sholom Cohen, Rick Kazman, John D. McGregor |
| 2008 | ICPR | Preceding car tracking using belief functions and a particle filter. | John Klein, Christle Lecomte, Pierre Mich |
| 2008 | ICSE | Implications of a single mobile computing device. | Len Bass, John Klein |
| 2004 | SPLC | Industrial-Strength Software Product Line Engineering. | John Klein, Deborah Hill, David M. Weiss |
| 2003 | ICSE | Industrial-Strength Software Product-Line Engineering. | John Klein, Barry Price, David M. Weiss |