| 2022 | AMIA | Clinical Reporting: Where Could HL7 FHIR Lead? | Joel Andress, Juliet Rubini, John W. Loonsk, Ahlia Sekkarie, Bryn Rhodes |
| 2018 | AMIA | Informatics Challenges, Solutions, and Opportunities for Public Health Electronic Case Reporting. | John W. Loonsk, Catherine J. Staes, Joe Jackson, John Stamm |
| 2017 | AMIA | Advancing electronic case reporting (eCR) to enable public health disease control and emergency response: getting into the technical weeds! | Catherine J. Staes, John W. Loonsk, Kathryn Turner, Noam H. Arzt, Patina Zarcone |
| 2014 | AMIA | A Hybrid Electronic Surveillance Design Pattern for Public and Population Health. | John W. Loonsk, Hadi Kharrazi, Jonathan P. Weiner |
| 2005 | AMIA | PHIN Preparedness: Early Event Detection. | John W. Loonsk, Laura A. Conn, Sunanda R. McGarvey, Jennifer Johnson |
| 2005 | AMIA | PHIN Preparedness: Outbreak Management. | Timothy D. Morris, Martha Cicchinelli, Sunanda R. McGarvey, Jennifer Johnson, Laura A. Conn, John W. Loonsk |
| 2002 | AMIA | Introduction of a hierarchy to LOINC to facilitate public health reporting. | Steven J. Steindel, John W. Loonsk, Alan Sim, Timothy J. Doyle, Robb S. Chapman, Samuel L. Groseclose |
| 1998 | AMIA | WebINQUIRER: Transition of an Educational Database to a Platform-Independent Environment. | Robert T. Aarhus Jr., Stephen M. Downs, John W. Loonsk, Daniel S. Fritsch |
| 1998 | AMIA | A Modular Coding Engine Based on the National Library of Medicine's Knowledge Source Server. | Guy Roussel, John W. Loonsk |
| 1994 | CBMS | Graphical representation of medical information in the Visual Chart. | Harold I. Litt, John W. Loonsk |