| 2026 | COMPSAC | GDGraph: Geometry-Enhanced Dual-View Graph for Molecular Representation Learning. | Yu Liu, Jonathan D. Hirst, Jianfeng Ren, Bencan Tang, Dave Towey |
| 2025 | COMPSAC | Chemically-aware Attention-based Multi-modal Fusion Framework for Molecular Representation Learning. | Yu Liu, Jonathan D. Hirst, Jianfeng Ren, Bencan Tang, Dave Towey |
| 2024 | COMPSAC | Three-Branch Molecular Representation Learning Framework for Predicting Molecular Properties in Drug Discovery. | Yu Liu, Lihui Duo, Jonathan D. Hirst, Jianfeng Ren, Bencan Tang, Dave Towey |
| 2007 | GECCO | Automated alphabet reduction method with evolutionary algorithms for protein structure prediction. | Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Kumara Sastry, Xavier Llor, Natalio Krasnogor |
| 2006 | GECCO | Coordination number prediction using learning classifier systems: performance and interpretability. | Jaume Bacardit, Michael Stout, Natalio Krasnogor, Jonathan D. Hirst, Jacek Blazewicz |
| 2002 | GECCO | Alignment Of Protein Structures With A Memetic Evolutionary Algorithm. | Robert D. Carr, William E. Hart, Natalio Krasnogor, Jonathan D. Hirst, Edmund K. Burke, James Smith |
| 2002 | PPSN | Multimeme Algorithms for Protein Structure Prediction. | Natalio Krasnogor, B. P. Blackburne, Edmund K. Burke, Jonathan D. Hirst |