| 2026 | DATA | Scalable Data Management for Smart Campus Digital Twin Applications. | Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | DATA | A Serverless Client-Side Privacy Index for Sensitive Data Processing. | Jos Gameiro, Jos Lus Oliveira, Joo Rafael Almeida |
| 2026 | ICISSP | Green by Design: Embedding Sustainability into Cybersecurity Architectures. | ngelo Borges, Joo Rafael Almeida |
| 2026 | ICISSP | Reflections of Social Engineering Awareness Negligence in Facilitating Cyber-Physical Attacks. | Lus Filipe Gomes, Lus Miguel Batista, Joo Rafael Almeida |
| 2026 | ICORES | Optimizing Job Rotation in Assembly Lines by Balancing Productivity and Worker Well-Being. | Joana Rafaela Almeida, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SECRYPT | Managing Cybersecurity Compliance with Structured Guidance and Integrated Audit Support. | Mariana Andrade, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SIMULTECH | A Predictive Data-Driven Framework for Multi-Line Manufacturing Throughput Analysis. | Joana Rafaela Almeida, Raquel Paradinha, Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SIMULTECH | A Governance and Architectural Framework for Agentic AI-Driven Gamified Security Awareness. | Lus Filipe Gomes, Lus Miguel Batista, Antnio Deus, Jos Lus Oliveira, Joo Rafael Almeida |
| 2025 | CBMS | A Comparative Analysis of Ai-Based Solutions for Clinical Documentation. | Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | CBMS | An Embedding-Based Machine Learning Solution for Medical Concept Mapping. | Vicente Barros, Raquel Paradinha, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | CoDIT | Graph-based Optimization for Assembly Line Balancing Incorporating Metabolic Restrictions. | Joana Rafaela Almeida, Ana Moura, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | ISCC | Securing DevOps by Identifying the Most Common Vulnerabilities in CI/CD Pipelines. | Lus Miguel Batista, Dinis Barroqueiro Cruz, Dimitri Silva, Joo Rafael Almeida, Jos Lus Oliveira |
| 2024 | CBMS | Assessing the feasibility of observational data sources for multicenter clinical studies. | Joo Rafael Almeida, Peter R. Rijnbeek, Maxim Moinat, Jos Lus Oliveira |
| 2024 | CBMS | HealthDBFinder: a question-answering task for health database discovery. | Joo Rafael Almeida, Jorge Miguel Silva, Lus Carlos Afonso, Tiago Melo Almeida, Rui Antunes, Richard A. A. Jonker, Joo Antnio Reis, Dimitri Alexandre da Silva, Srgio Matos, Jos Lus Oliveira |
| 2024 | CIBCB | A comprehensive study of databases to assess the reliability of metagenomic tools. | Ins Branco Martins, Jorge Miguel Silva, Joo Rafael Almeida |
| 2023 | CBMS | A FAIR Approach to Real-World Health Data Management and Analysis. | Joo Rafael Almeida, Jorge Miguel Silva, Jos Lus Oliveira |
| 2023 | CBMS | Upscaling Operators of Essential Services Incident Response Teams. | Joo Paulo Barraca, Cristina Cerqueira, Jos Filipe Alves, Sara Andrade, Antnio Meireles, Joo Rafael Almeida |
| 2023 | CBMS | SecureFASTA: Ensuring privacy and trust when sharing genomic data. | Diniz Cruz, Joo Rafael Almeida, Jorge Miguel Silva, Jos Lus Oliveira |
| 2022 | CBMS | A secure architecture for exploring patient-level databases from distributed institutions. | Joo Rafael Almeida, Joo Paulo Barraca, Jos Lus Oliveira |
| 2022 | CBMS | Combining heterogeneous patient-level data into tranSMART to support multicentre studies. | Joo Rafael Almeida, Lus Bastio Silva, Alejandro Pazos, Jos Lus Oliveira |
| 2022 | CBMS | Visualising Time-evolving Semantic Biomedical Data. | Arnaldo Pereira, Joo Rafael Almeida, Rui Pedro Lopes, Jos Lus Oliveira |
| 2022 | CBMS | The value of compression for taxonomic identification. | Jorge Miguel Silva, Joo Rafael Almeida |
| 2021 | CBMS | An Architecture to Define Cohorts over Medical Imaging Datasets. | Joo Rafael Almeida, Eriksson J. Melicio Monteiro, Jos Lus Oliveira |
| 2021 | CBMS | A Comparative Analysis of Data Platforms for Rare Diseases. | Mariana Sequeira, Joo Rafael Almeida, Jos Lus Oliveira |
| 2020 | CBMS | A Recommender System to Help Discovering Cohorts in Rare Diseases. | Joo Rafael Almeida, Eriksson J. Melicio Monteiro, Lus A. Bastio Silva, Alejandro Pazos Sierra, Jos Lus Oliveira |
| 2020 | CBMS | Multi-language Concept Normalisation of Clinical Cohorts. | Joo Rafael Almeida, Jos Lus Oliveira |
| 2020 | SAC | Rule-based extraction of family history information from clinical notes. | Joo Rafael Almeida, Srgio Matos |
| 2018 | CBMS | Simplifying the Digitization of Clinical Protocols for Diabetes Management. | Joo Rafael Almeida, Joana Guimaraes, Jos Lus Oliveira |
| 2018 | CBMS | Services Orchestration and Workflow Management in Distributed Medical Imaging Environments. | Joo Rafael Almeida, Tiago Marques Godinho, Lus A. Bastio Silva, Carlos Costa, Jos Lus Oliveira |