| 2017 | AMIA | Cross-species Mapping of Human and Mouse Craniofacial Structures. | Jos L. V. Mejino Jr., Landon T. Detwiler, Timothy C. Cox, James F. Brinkley |
| 2016 | AMIA | Development of a Novel Markov Chain Model for the Prediction of Head and Neck Squamous Cell Carcinoma Dissemination. | Hyunggu Jung, Anthony Law, Eli Grunblatt, Lucy Lu Wang, Aaron S. Kusano, Jos L. V. Mejino Jr., Mark Whipple |
| 2015 | AMIA | Converting the Foundational Model of Anatomy to OWL2. | Landon T. Detwiler, Jos L. V. Mejino Jr., James F. Brinkley |
| 2008 | AMIA | Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. | Daniel L. Cook, Jos L. V. Mejino Jr., Maxwell Lewis Neal, John H. Gennari |
| 2008 | AMIA | FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. | Jos L. V. Mejino Jr., Daniel L. Rubin, James F. Brinkley |
| 2005 | AMIA | A Strategy for Improving and Integrating Biomedical Ontologies. | Cornelius Rosse, Anand Kumar, Jos L. V. Mejino Jr., Daniel L. Cook, Landon T. Detwiler, Barry Smith |
| 2003 | AMIA | Proposed Classification of Cells in the Foundational Model of Anatomy. | Augusto V. Agoncillo, Jos L. V. Mejino Jr., Kurt L. Rickard, Landon T. Detwiler, Cornelius Rosse |
| 2003 | AMIA | Efficient Web-Based Navigation of the Foundational Model of Anatomy. | Landon T. Detwiler, Jos L. V. Mejino Jr., Cornelius Rosse, James F. Brinkley |
| 2003 | AMIA | The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. | Richard F. Martin, Kurt L. Rickard, Jos L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse |
| 2003 | AMIA | Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. | Jos L. V. Mejino Jr., Augusto V. Agoncillo, Kurt L. Rickard, Cornelius Rosse |
| 2001 | AMIA | Foundational model of neuroanatomy: implications for the Human Brain Project. | Richard F. Martin, Jos L. V. Mejino Jr., Douglas M. Bowden, James F. Brinkley, Cornelius Rosse |
| 2001 | AMIA | Representation of Structural Relationships in the Foundational Model of Anatomy. | Jos L. V. Mejino Jr., Natalya Fridman Noy, Mark A. Musen, James F. Brinkley, Cornelius Rosse |
| 2001 | AMIA | The role of definitions in biomedical concept representation. | Joshua Michael, Jos L. V. Mejino Jr., Cornelius Rosse |
| 1999 | AMIA | Influence of the Digital Anatomist Foundational Model on traditional representations of anatomical concepts. | Augusto V. Agoncillo, Jos L. V. Mejino Jr., Cornelius Rosse |
| 1999 | AMIA | Conceptualization of anatomical spatial entities in the Digital Anatomist Foundational Model. | Jos L. V. Mejino Jr., Cornelius Rosse |
| 1998 | AMIA | The potential of the digital anatomist foundational model for assuring consistency in UMLS sources. | Jos L. V. Mejino Jr., Cornelius Rosse |