| 2014 | ICIP | An image processing approach to the simulation of electron microscopy volumes of atomic structures. | Carlos Oscar Snchez Sorzano, Javier Vargas, Joaqun Otn, Vahid Abrishami, Jos Miguel de la Rosa-Trevn, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, Jos Mara Carazo |
| 2008 | ISMB | Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. | Mariana L. Neves, Jos Mara Carazo, Alberto D. Pascual-Montano |
| 2006 | ECCV | Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. | Ignacio Arganda-Carreras, Carlos Oscar Snchez Sorzano, Roberto Marabini, Jos Mara Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic |
| 2005 | CBMS | Grid Computing in 3D-EM Image Processing Using Xmipp. | Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Snchez Sorzano, Jos Mara Carazo |
| 2005 | ECCB | Fast maximum-likelihood refinement of electron microscopy images. | Sjors H. W. Scheres, Mikel Valle, Jos Mara Carazo |
| 2004 | PDP | Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. | Jose-Roman Bilbao-Castro, Jos Mara Carazo, Jos-Jess Fernndez, Inmaculada Garca |
| 2003 | ICIP | Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. | Jose-Roman Bilbao-Castro, Jos Mara Carazo, Inmaculada Garca, Jos-Jess Fernndez |
| 2002 | ICPR | Modeling Shape and Topology of 3D Images of Biological Specimens. | Pedro A. de Alarcn, Alberto D. Pascual-Montano, Amarnath Gupta, Jos Mara Carazo |
| 1999 | IWANN | Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets. | Juan Julin Merelo Guervs, Vctor Manuel Rivas Santos, Gustavo Romero, Pedro ngel Castillo Valdivieso, Alberto Pascual, Jos Mara Carazo |
| 1999 | IWANN | Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification. | Alberto Pascual, Montserrat Barcna, Juan Julin Merelo Guervs, Jos Mara Carazo |
| 1998 | PDP | Biological sequence analysis on distributed-shared memory multiprocessors. | Andrs Rodrguez Moreno, Luis Gerardo de la Fraga, Emilio L. Zapata, Jos Mara Carazo, Oswaldo Trelles |
| 1997 | IWANN | A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree. | Joaqun Dopazo, Huaichun Wang, Jos Mara Carazo |
| 1997 | IWANN | A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images. | Juan Julin Merelo Guervs, Alberto Prieto, Federico Morn, Roberto Marabini, Jos Mara Carazo |
| 1994 | PDP | 3d Reconstruction Of Macromolecules On Multiprocessors. | Manuel Ujaldon, Rafael Asenjo, Emilio L. Zapata, Jos Carlos Cabaleiro, Jos Mara Carazo |
| 1993 | PDP | Parallel algorithm for principal components based on Hotelling's iterative procedure. | Jos Carlos Cabaleiro, Jos Mara Carazo, Emilio L. Zapata |
| 1988 | ICASSP | 3-D electron microscopy and incomplete angular coverage: a restoration scheme based on projections onto convex sets. | Jos Mara Carazo |