| 2026 | AIME | A Phyto-Ontology for Integrative Therapeutic Discovery. | Oresta S. I. Hewryk, Joseph D. Romano |
| 2025 | AAAI | Enhancing Molecular Representation Learning Through the Combination of 3D and 2D Graph Machine Learning (Student Abstract). | Ian Tong Pan, Joseph D. Romano |
| 2023 | GECCO | Extending Tree-Based Automated Machine Learning to Biomedical Image and Text Data Using Custom Feature Extractors. | Rachit Kumar, Joseph D. Romano, Marylyn D. Ritchie, Jason H. Moore |
| 2018 | AMIA | Using model classifications as quantitative traits to estimate stroke heritability. | Phyllis M. Thangaraj, Fernanda C. Polubriaginof, Benjamin Kummer, Rami Vanguri, Tal Lorberbaum, Joseph D. Romano, Kayla Quinnies, Alexandre Yahi, Mitchell S. V. Elkind, Nicholas P. Tatonetti |
| 2017 | AMIA | The Use of Informatics to Reduce Disparities in Transgender Health. | Kenrick Cato, Joseph D. Romano, Rami Vanguri, Nicholas P. Tatonetti |
| 2017 | AMIA | Deep recurrent neural networks identify transgender patients. | Joseph D. Romano, Kenrick Cato, Rami Vanguri, Nicholas P. Tatonetti |