Joshua C. Denny
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
101
Venues
6
Active years
2002–2022
Best venue rank
A*
Where they publish
Papers
101 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2022 | AMIA | Impact of COVID-19 on mental health outcomes in the All of Us Research Program. | Onajia J. Stubblefield, David J. Schlueter, Jacob Keaton, Ariel Williams, Slavina Goleva, Tracey Ferrara, Chenjie Zeng, Huan Mo, Joshua C. Denny |
| 2022 | AMIA | Comparing Effect Sizes in Covid Positive Phenomic Profiles. | Ariel Williams, David J. Schlueter, Jacob Keaton, Tracey Ferrara, Onajia J. Stubblefield, Kyle Webb, Slavina Goleva, Jian Dai, Chenjie Zeng, Huan Mo, Thomas Cassini, Joshua C. Denny |
| 2021 | AMIA | Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). | Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache |
| 2021 | AMIA | Informatics-izing the National Institutes of Health. | Clement J. McDonald, Patricia Flatley Brennan, Michael F. Chiang, Joshua C. Denny, Zhiyong Lu |
| 2021 | AMIA | Systematic replication of smoking disease associations in the All of Us Research Program. | David J. Schlueter, Lina M. Sulieman, Jacob M. Keaton, Tracey Ferrara, Kyle Webb, Ariel Williams, Francis Ratsimbazafy, Jun Qian, Lisa Bastarache, Andrea H. Ramirez, Joshua C. Denny |
| 2021 | AMIA | Comparing the Phenomic Profile of All of Us Research Program and National COVID Cohort Collaborative. | Kyle P. Webb, David J. Schlueter, Jacob Keaton, Tracey Ferrara, Ariel Williams, Joshua C. Denny |
| 2020 | AMIA | Real-time Clinical Note Monitoring to Detect Conditions for Follow-up: a Case Study of Clinical Trial Enrollment in Drug-induced Torsades de Pointes and Stevens-Johnson Syndrome. | Sarah DeLozier, Peter Speltz, Jason Brito, Leigh Anne Tang, Janey Wang, Joshua C. Smith, Dario A. Giuse, Elizabeth Phillips, Kristina Williams, Teresa Strickland, Giovanni Davogustto, Dan M. Roden, Joshua C. Denny |
| 2020 | AMIA | Developing a Phenotype Risk Score for Opioid Adverse Events. | Leigh Anne Tang, Sarah DeLozier, Lisa Bastarache, Colin Walsh, Joshua C. Denny |
| 2019 | AMIA | Quality Analysis of the All of Us Research Program Health Surveys. | Robert M. Cronin, Sarah Feng, Brandy Mapes, Roxana Loperena-Cortes, Regina Andrade, David Schlundt, Ken A. Wallston, Mick P. Couper, Scott Sutherland, Cindy Chen, Joshua C. Denny |
| 2019 | AMIA | Extracting Drug Exposure Epochs and Drug Response Outcomes from Electronic Health Records. | Andrea H. Ramirez, Yaping Shi, Elliot M. Fielstein, Jonathan S. Schildcrout, Henry H. Ong, Joshua C. Denny, Josh F. Peterson |
| 2019 | AMIA | medExtractR: A medication extraction algorithm for electronic health records using the R programming language. | Hannah L. Weeks, Cole Beck, Elizabeth McNeer, Cosmin Adrian Bejan, Joshua C. Denny, Leena Choi |
| 2019 | AMIA | Combining Publicly-Available and Electronic Health Record Data to Reposition Drugs. | Patrick Wu, QiPing Feng, Joshua C. Denny, Wei-Qi Wei |
| 2019 | AMIA | Deep Learning Using Electronic Health Records and Genetic Data to Predict Cardiovascular Diseases. | Juan Zhao, QiPing Feng, Patrick Wu, Joshua C. Denny, Wei-Qi Wei |
| 2019 | PSB | Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43, 870 individuals from the eMERGE network. | Xinyuan Zhang, Yogasudha Veturi, Shefali Setia Verma, William Bone, Anurag Verma, Anastasia Lucas, Scott J. Hebbring, Joshua C. Denny, Ian B. Stanaway, Gail P. Jarvik, David R. Crosslin, Eric B. Larson, Laura Rasmussen-Torvik, Sarah A. Pendergrass, Jordan W. Smoller, Hakon Hakonarson, Patrick Sleiman, Chunhua Weng, David Fasel, Wei-Qi Wei, Iftikhar J. Kullo, Daniel J. Schaid, Wendy K. Chung, Marylyn D. Ritchie |
| 2019 | SDM | CP Tensor Decomposition with Cannot-Link Intermode Constraints. | Jette Henderson, Bradley A. Malin, Joshua C. Denny, Abel N. Kho, Jimeng Sun, Joydeep Ghosh, Joyce C. Ho |
| 2018 | AMIA | Crowdsourcing Clinical Chart Reviews. | Joseph R. Coco, Cheng Ye, Chen Hajaj, Yevgeniy Vorobeychik, Joshua C. Denny, Laurie L. Novak, Bradley A. Malin, Thomas A. Lasko, Daniel Fabbri |
| 2018 | AMIA | Phenotyping through Semi-Supervised Tensor Factorization (PSST). | Jette Henderson, Huan He, Bradley A. Malin, Joshua C. Denny, Abel N. Kho, Joydeep Ghosh, Joyce C. Ho |
| 2018 | AMIA | EHR Extraction of Longitudinal Exposure to Proton Pump Inhibitors. | Andrea H. Ramirez, Elliot M. Fielstein, QiPing Feng, Henry H. Ong, Jonathan S. Schildcrout, Yaping Shi, Joshua C. Denny, Josh F. Peterson |
| 2018 | AMIA | Using Topic Modeling to Identify Relationship between LPA Variant and Disease Phenotypes. | Juan Zhao, QiPing Feng, Patrick Wu, Joshua C. Denny, Wei-Qi Wei |
| 2018 | PSB | Session Introduction. | Dana C. Crawford, Alexander A. Morgan, Joshua C. Denny, Bruce J. Aronow, Steven E. Brenner |
| 2017 | AMIA | Large-Scale Text Mining of Social Determinants from Electronic Health Records: Case Studies of Homelessness and Adverse Childhood Experiences. | Cosmin Adrian Bejan, John Angiolillo, Douglas Conway, Robertson Nash, Jana Shirey-Rice, Loren Lipworth-Elliot, Robert M. Cronin, Jill M. Pulley, Sunil Kripalani, Shari Barkin, Kevin B. Johnson, Joshua C. Denny |
| 2017 | AMIA | A Simple and Efficient Method for the Management of Multiple Electronic Health Record-Driven Phenotype Projects. | Cosmin Adrian Bejan, Joshua C. Denny |
| 2017 | AMIA | The Data and Research Center of the All of Us Research Program: Framework for a National Cohort Program and Research Opportunities. | Robert J. Carroll, Joshua C. Mandel, Karthik Natarajan, Scott Sutherland, Joshua C. Denny |
| 2017 | AMIA | Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. | Richard C. Kiefer, Luke V. Rasmussen, Jennifer A. Pacheco, Peter Speltz, Joshua C. Denny, William K. Thompson, Jyotishman Pathak, Guoqian Jiang |
| 2017 | AMIA | HealthPro: An integrated web application for essential health data and biological specimen collection in the Precision Medicine Initiative. | Kelsey R. Mayo, Robert J. Carroll, Jason Tan, Rebecca Johnston, Celecia M. Scott, Joshua C. Denny, Paul A. Harris |
| 2017 | AMIA | The All of Us Research Program Researcher Portal: Innovative access to Unprecendented Data. | Andrea H. Ramirez, Anthony A. Philippakis, Gonalo R. Abecasis, Paul A. Harris, Joshua C. Denny |
| 2017 | AMIA | Sub-Phenotyping of Crohn's Disease Using a Large Electronic Record Cohort. | Jamie R. Robinson, Lisa Bastarache, Robert J. Carroll, Elizabeth A. Scoville, David A. Schwartz, Joshua C. Denny |
| 2017 | AMIA | Association of BMI and Obesity Genetic Risk Score with Surgical Procedures Through a Procedure-wide Association Study. | Jamie R. Robinson, Zongyang Mou, Lisa Bastarache, Wei-Qi Wei, Robert J. Carroll, Joshua C. Denny |
| 2017 | AMIA | The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. | Peter Speltz, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, William K. Thompson, Guoqian Jiang, Jyotishman Pathak, Joshua C. Denny |
| 2017 | AMIA | A Phenome-Wide Association Study (PheWAS) of Iron Deficiency in a Large Electronic Health Record Database. | Patrick Wu, Joshua C. Denny, Wei-Qi Wei |
| 2017 | PSB | Session Introduction. | Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner |
| 2017 | PSB | Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population. | Laura K. Wiley, Jacob P. VanHouten, David Samuels, Melinda Aldrich, Dan M. Roden, Josh F. Peterson, Joshua C. Denny |
| 2016 | AMIA | An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies. | Rui Duan, Ming Cao, Yonghui Wu, Jing Huang, Joshua C. Denny, Hua Xu, Yong Chen |
| 2016 | AMIA | Building Successful Natural Language Processing Applications in Clinical Research and Healthcare Operations. | Yang Huang, Hua Xu, Joshua C. Denny |
| 2016 | AMIA | An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. | Guoqian Jiang, William K. Thompson, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, Huan Mo, Peter Speltz, Joshua C. Denny, Jyotishman Pathak |
| 2016 | AMIA | Applying Active Learning to Clinical Abbreviation Disambiguation in Real Time. | Sungrim Moon, Yukun Chen, Jingqi Wang, Joshua C. Denny, S. Trent Rosenbloom, Ky Nguyen, Tolulola Dawodu, Hua Xu |
| 2016 | PSB | Translational Bioinformatics 101. | Jessica D. Tenenbaum, Subha Madhavan, Robert R. Freimuth, Joshua C. Denny, Lewis J. Frey |
| 2015 | AMIA | Predicting Clinical Laboratory Turnaround Time. | Alex C. Cheng, Marc Beller, Joshua C. Denny |
| 2015 | AMIA | Real Time Active Learning Study for Clinical Named Entity Recognition. | Yukun Chen, Sungrim Moon, Thomas A. Lasko, Qiaozhu Mei, Jingqi Wang, Trevor Cohen, Qingxia Chen, Joshua C. Denny, Hua Xu |
| 2015 | AMIA | Automated Classification of Consumer Health Information Needs in Patient Portal Messages. | Robert M. Cronin, Daniel Fabbri, Joshua C. Denny, Gretchen Purcell Jackson |
| 2015 | AMIA | Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. | Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak |
| 2015 | AMIA | A Genome- and Phenome- Wide Study of Diverticulosis. | Yoonjung Y. Joo, Jennifer A. Pacheco, Loren L. Armstrong, William K. Thompson, Robert J. Carroll, Joshua C. Denny, Peggy L. Peissig, James G. Linneman, Jyotishman Pathak, Girish N. Nadkarni, Laura Rasmussen-Torvik, M. Geoffrey Hayes, Abel N. Kho |
| 2015 | AMIA | Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. | Enid N. H. Montague, Jie Xu, Luke V. Rasmussen, Joshua C. Denny, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Peter Speltz, William K. Thompson, Jyotishman Pathak |
| 2015 | AMIA | Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. | Huan Mo, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson |
| 2015 | AMIA | Quantifying Tobacco Exposure Using Clinical Notes and Natural Language Processing to Enable Lung Cancer Screening. | Travis Osterman, Wei-Qi Wei, Joshua C. Denny |
| 2015 | AMIA | (Authoring) Rules, (Distributed Query) Tools, and Drools: The challenging new world of high throughput phenotyping. | Jennifer A. Pacheco, Abel N. Kho, Jyotishman Pathak, Joshua C. Denny, Shawn N. Murphy |
| 2015 | AMIA | PhEMA: Phenotype Modeling, Sharing and Execution Architecture. | Jyotishman Pathak, Joshua C. Denny, William K. Thompson, Luke V. Rasmussen |
| 2015 | AMIA | Natural Language Processing for Phenotype Extraction: Challenges in Extraction and Representation. | Guergana Savova, Rebecca S. Jacobson, Joshua C. Denny, Nicole L. Washington, Harry Hochheiser |
| 2015 | AMIA | Building the Computational Workforce for Precision Medicine. | Jessica D. Tenenbaum, Joshua C. Denny, David Flannery, Douglas B. Fridsma, Marc S. Williams |
| 2015 | AMIA | PheWAS Network Analysis and Visualization. | Yaomin Xu, Todd L. Edwards, Lisa Bastarache, Rebecca N. Jerome, Shilin Zho, Eric Torstenson, Wei-Qi Wei, Jana Shirey-Rice, Erica A. Bowton, Yu Shyr, Jill M. Pulley, Joshua C. Denny |
| 2015 | KDD | Rubik: Knowledge Guided Tensor Factorization and Completion for Health Data Analytics. | Yichen Wang, Robert Chen, Joydeep Ghosh, Joshua C. Denny, Abel N. Kho, You Chen, Bradley A. Malin, Jimeng Sun |
| 2014 | AMIA | Learning to Identify Treatment Relations in Clinical Text. | Cosmin Adrian Bejan, Joshua C. Denny |
| 2014 | AMIA | PheWAS and Genetics Define Subphenotypes in Drug Response. | Robert J. Carroll, Jeremy L. Warner, Anne E. Eyler, Charles Moore, Jayanth Doss, Katherine P. Liao, Robert M. Plenge, Joshua C. Denny |
| 2014 | AMIA | Automated Assessment of Medical Students' Clinical Exposures according to AAMC Geriatric Competencies. | Yukun Chen, Jesse O. Wrenn, Hua Xu, Anderson Spickard III, Ralf Habermann, James S. Powers, Joshua C. Denny |
| 2014 | AMIA | A Preliminary Study of Coupling Transfer Learning with Active Learning for Clinical Named Entity Recognition between Two Institutions. | Yukun Chen, Yaoyun Zhang, Qiaozhu Mei, Dead Account, Joshua C. Denny, Hua Xu |
| 2014 | AMIA | Applying Active Learning to Word Sense Disambiguation in a Real-Time Setting. | Sungrim Moon, Yukun Chen, Jingqi Wang, Joshua C. Denny, Hua Xu |
| 2014 | AMIA | A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. | Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams |
| 2014 | AMIA | Evaluation of Existing Phenotype Authoring Tools for Clinical Research. | Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague |
| 2014 | AMIA | Identifying Metastases from Pathology Reports in Lung Cancer Patients. | Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu |
| 2014 | AMIA | Phenome-Wide Association Studies Using NLP-Derived Concepts. | Pedro L. Teixeira, Robert J. Carroll, Lisa Bastarache, Peter Speltz, Joshua C. Smith, Joshua C. Denny |
| 2014 | AMIA | Evaluation of Diagnosis Codes, Clinical Notes, and Medications on Identifying Subjects with a Specific Disease Phenotype. | Wei-Qi Wei, Pedro L. Teixeira, Huan Mo, Robert M. Cronin, Jeremy L. Warner, Joshua C. Denny |
| 2014 | AMIA | Mining electronic health record data to detect drug-repurposing signals for cancers. | Hua Xu, Qingxia Chen, Jeremy L. Warner, Han Xue, Min Jiang, Anushi Shah, Melinda Aldrich, Qi Dai, Joshua C. Denny |
| 2014 | AMIA | Qualitative evaluation of three phenotype information models to find methotrexate liver injury. | Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak |
| 2014 | CIKM | Parsing Clinical Text: How Good are the State-of-the-Art Parsers? | Min Jiang, Yang Huang, Jungwei Fan, Buzhou Tang, Joshua C. Denny, Hua Xu |
| 2014 | PSB | Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients. | Matthew Oetjens, William S. Bush, Kelly A. Birdwell, Holli H. Dilks, Erica A. Bowton, Joshua C. Denny, Russell A. Wilke, Dan M. Roden, Dana C. Crawford |
| 2013 | AMIA | Classifying ICD-9 codes into meaningful disease categories: A comparison between two coding systems. | Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny |
| 2013 | AMIA | Open Source R Implementation of the PheWAS Methodology. | Robert J. Carroll, Lisa Bastarache, Joshua C. Denny |
| 2013 | AMIA | A Study of Active Learning Methods for Clinical Entities Recognition. | Yukun Chen, Thomas A. Lasko, Qiaozhu Mei, Joshua C. Denny, Hua Xu |
| 2013 | AMIA | Automated Identification of Drug and Food Allergies Entered in EHRs Using Non-Standard Terminology. | Richard H. Epstein, Jesse M. Ehrenfeld, Michael Stockin, Paul St. Jacques, Brian Rothman, Joshua C. Denny |
| 2013 | AMIA | A Natural Language Processing Algorithm to define a Venous Thromboembolism Phenotype. | Eugenia R. McPeek Hinz, Joshua C. Denny, Lisa Bastarache |
| 2013 | AMIA | Using PheWAS and Natural Language Processing to Discover Clinical Associations for Congenital Chest Deformities. | Christine M. McEvoy, Robert J. Carroll, Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny |
| 2013 | AMIA | Sharing of Genomic Information: Perspectives from Stakeholders. | Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes |
| 2013 | AMIA | Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information. | Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz |
| 2013 | AMIA | Validation and Enhancement of a Computable Medication Indication Resource (MEDI) Using a Large Practice-based Dataset. | Wei-Qi Wei, Jonathan D. Mosley, Lisa Bastarache, Joshua C. Denny |
| 2013 | AMIA | Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. | Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush |
| 2013 | AMIA | Building a Large Clinical Abbreviation Sense Inventory from Discharge Summaries. | Yonghui Wu, S. Trent Rosenbloom, Joshua C. Denny, Randolph A. Miller, Dario A. Giuse, Hua Xu |
| 2013 | CHI | Messaging to your doctors: understanding patient-provider communications via a portal system. | Si Sun, Xiaomu Zhou, Joshua C. Denny, S. Trent Rosenbloom, Hua Xu |
| 2013 | CIKM | A prototype application for real-time recognition and disambiguation of clinical abbreviations. | Yonghui Wu, Joshua C. Denny, S. Trent Rosenbloom, Randolph A. Miller, Dario A. Giuse, Min Song, Hua Xu |
| 2012 | AMIA | Diabetes and Susceptibility to Infection: A Study of Lab Culture Results in the EMR. | Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny |
| 2012 | AMIA | Establishing Drug Treatment discovery rate of MedEx. | Haresh Bhatia, Eugenia R. McPeek Hinz, Joshua C. Denny |
| 2012 | AMIA | Extracting Semantic Lexicons from Discharge Summaries using Machine Learning and the C-Value Method. | Min Jiang, Joshua C. Denny, Buzhou Tang, Hongxin Cao, Hua Xu |
| 2012 | AMIA | A Study of Transportability of an Existing Smoking Status Detection Module across Institutions. | Mei Liu, Anushi Shah, Min Jiang, Neeraja B. Peterson, Qi Dai, Melinda Aldrich, Qingxia Chen, Erica A. Bowton, Hongfang Liu, Joshua C. Denny, Hua Xu |
| 2012 | AMIA | Type 2 Diabetes Risk Forecasting from EMR Data using Machine Learning. | Subramani Mani, Yukun Chen, Tom Elasy, Warren Clayton, Joshua C. Denny |
| 2012 | AMIA | Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury. | Jyotishman Pathak, Aref Al-Kali, Jayant Talwalkar, Abel N. Kho, Joshua C. Denny, Sean P. Murphy, Kevin Bruce, Matthew J. Durski, Christopher G. Chute |
| 2012 | AMIA | PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research. | Joshua Pruitt, Peter Speltz, Jacqueline Kirby, Melissa A. Basford, Jonathan L. Haines, Joshua C. Denny |
| 2012 | AMIA | MedEx-UIMA - An Open-Source System for Medication Information Extraction from Clinical Text. | Anushi Shah, Min Jiang, Yonghui Wu, Joshua C. Denny, Hua Xu |
| 2012 | AMIA | Understanding Patient-Provider Communication via a Patient Portal. | Si Sun, Xiaomu Zhou, Hua Xu, Joshua C. Denny |
| 2012 | AMIA | An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. | William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Peggy L. Peissig, Joshua C. Denny, Abel N. Kho, Aaron W. Miller, Jyotishman Pathak |
| 2012 | AMIA | Comparing Diagnoses Recorded in Problem Lists vs. Administrative Codes. | Wei-Qi Wei, Lisa Bastarache, Joshua C. Denny |
| 2012 | AMIA | A comparative study of current clinical natural language processing systems on handling abbreviations in discharge summaries. | Yonghui Wu, Joshua C. Denny, Samuel Rosenbloom, Randolph A. Miller, Dario A. Giuse, Hua Xu |
| 2012 | AMIA | Electronic health record data suggests metformin improves cancer survival: A new model for drug repurposing studies. | Hua Xu, Melinda Aldrich, Qingxia Chen, Neeraja B. Peterson, Qi Dai, Mia A. Levy, Anushi Shah, Han Xue, Ying Li, Carol Friedman, Hongfang Liu, Joshua C. Denny |
| 2009 | AMIA | Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. | Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson |
| 2008 | AMIA | Development and Evaluation of a Clinical Note Section Header Terminology. | Joshua C. Denny, Randolph A. Miller, Kevin B. Johnson, Anderson Spickard III |
| 2007 | AMIA | Analysis of a Computerized Sign-out Tool: Identification of Unanticipated Uses and Contradictory Content. | Thomas R. Campion Jr., Joshua C. Denny, Stuart T. Weinberg, Nancy M. Lorenzi, L. Russell Waitman |
| 2006 | AMIA | Analysis of Medical Student Content Searches that Resulted in Unidentified UMLS Concepts. | Benjamin P. Rosenbaum, Joshua C. Denny, Anderson Spickard III |
| 2005 | AMIA | Identifying UMLS concepts from ECG Impressions using Knowledge Map. | Joshua C. Denny, Anderson Spickard III, Randolph A. Miller, Jonathan S. Schildcrout, Dawood Darbar, S. Trent Rosenbloom, Josh F. Peterson |
| 2005 | AMIA | Can Users Estimate Their Usage of a Web-Based Application? Validating a Self-Report Usage Questionnaire. | Firas H. Wehbe, Joshua C. Denny, Anderson Spickard III |
| 2003 | AMIA | The KnowledgeMap Project: Development of a Concept-Based Medical School Curriculum Database. | Joshua C. Denny, Plomarz R. Irani, Firas H. Wehbe, Jeffrey D. Smithers, Anderson Spickard III |
| 2003 | AMIA | Formative Evaluation to Guide Early Deployment of an Online Content Management Tool for Medical Curriculum. | Firas H. Wehbe, Brian Armstrong, Matthew R. Peachey, Joshua C. Denny, Anderson Spickard III |
| 2002 | AMIA | A New Tool to Identify Key Biomedical Concepts in Text Documents, with Special Application to Curriculum Content. | Joshua C. Denny, Jeffrey D. Smithers, Anderson Spickard III, Randolph A. Miller |
| 2002 | AMIA | Using Concept Markers to Find Genetics Content in a Medical School Curriculum. | Jeffrey D. Smithers, Joshua C. Denny, Anderson Spickard III, Randolph A. Miller |