| 2014 | ATSIP | Advanced methodology useful for exploring distortions in confocal microscopy medical images: Application to neurodegenerative pathology. | Rania Trigui, Lamia Sallemi, Julien Dauguet, Ahmed Ben Hamida |
| 2013 | MICCAI | A Viterbi Approach to Topology Inference for Large Scale Endomicroscopy Video Mosaicing. | Jessie Mah, Tom Vercauteren, Benoit Rosa, Julien Dauguet |
| 2007 | MICCAI | Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. | Julien Dauguet, Davi Bock, R. Clay Reid, Simon K. Warfield |
| 2006 | MICCAI | 3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. | Julien Dauguet, Sharon Peled, Vladimir Berezovskii, Thierry Delzescaux, Simon K. Warfield, Richard T. Born, Carl-Fredrik Westin |
| 2004 | MICCAI | Robust Inter-slice Intensity Normalization Using Histogram Scale-Space Analysis. | Julien Dauguet, Jean-Franois Mangin, Thierry Delzescaux, Vincent Frouin |
| 2003 | MICCAI | Using 3D Non Rigid FFD-Based Method to Register post mortem 3D Histological Data and in vivo MRI of a Baboon Brain. | Thierry Delzescaux, Julien Dauguet, Franoise Cond, Renaud Maroy, Vincent Frouin |