| 2014 | BIBE | Gene Networks Inference through Linear Grouping of Variables. | Carlos Fernando Montoya-Cubas, David Correa Martins Jr., Carlos Silva Santos, Junior Barrera |
| 2013 | ISMM | Analytical Solutions for the Minkowski Addition Equation. | Joel Edu Snchez Castro, Ronaldo Fumio Hashimoto, Junior Barrera |
| 2013 | ISMM | Solving Problems in Mathematical Morphology through Reductions to the U-Curve Problem. | Marcelo da Silva Reis, Junior Barrera |
| 2012 | CBMS | Method to support diagnosis of cervical intraepithelial neoplasia (CIN) based on structural analysis of histological images. | Gisele Helena Barboni Miranda, Edson Garcia Soares, Junior Barrera, Joaquim Cezar Felipe |
| 2007 | ISMM | Automatic microarray gridding by mathematical morphology. | Daniel Oliveira Dantas, Junior Barrera |
| 2007 | ISMM | Basis Computation Algorithms. | Nina S. T. Hirata, Roberto Hirata Jr., Junior Barrera |
| 2007 | ISMM | A branch-and-bound optimization algorithm for U-shaped cost functions on Boolean lattices. | Marcelo Ris, Junior Barrera |
| 2007 | ISMM | A structural PGN model for control of cell-cycle Progression. | Nestor Walter Trepode, Hugo Aguirre Armelin, Michael L. Bittner, Junior Barrera, Marco Dimas Gubitoso, Ronaldo Fumio Hashimoto |
| 2007 | ISMM | An entropy minimization approach for designing W-operators. | Daniel Andr Vaquero, Junior Barrera, Roberto Hirata Jr. |
| 2005 | CIARP | Automatic Window Design for Gray-Scale Image Processing Based on Entropy Minimization. | David Correa Martins Jr., Roberto M. Cesar, Junior Barrera |
| 2005 | ISMM | Binary Decision Diagrams as a New Paradigm for Morphological Machines. | Junior Barrera, Ronaldo Fumio Hashimoto |
| 2003 | ICPP | A Parallel Algorithm for Enumerating Combinations. | Martha Torres, Alfredo Goldman, Junior Barrera |
| 2002 | IPAS | Granulometric classifiers from small samples. | Yoganand Balagurunathan, Ronaldo Fumio Hashimoto, Seungchan Kim, Junior Barrera, Edward R. Dougherty |
| 2002 | IPAS | Clustering granulometric features. | Marcel Brun, Yoganand Balagurunathan, Junior Barrera, Edward R. Dougherty |
| 2002 | IPAS | High-performance algorithm for Boolean function minimization: the partitioned incremental splitting of intervals (PISI). | Martha Torres, Nina S. T. Hirata, Junior Barrera |
| 2000 | ISMM | Boosting OCR Classifier by Optimal Edge Noise Filtering. | Junior Barrera, Marcel Brun, Routo Terada, Edward R. Dougherty |
| 2000 | ISMM | From the Sup-Decomposition to A Sequential Decomposition. | Ronaldo Fumio Hashimoto, Junior Barrera, Edward R. Dougherty |
| 2000 | ISMM | Some Applications of Aperture Filters. | Roberto Hirata Jr., Edward R. Dougherty, Junior Barrera |
| 1996 | ISMM | Set Operations on Closed Intervals and their Applications to the Automatic Programming of MMach's. | Junior Barrera, Guillermo Pablo Salas, Ronaldo Fumio Hashimoto |
| 1996 | ISMM | Automatic Programming of MMach's for OCR. | Junior Barrera, Routo Terada, Flvio Soares Corra da Silva, Nina Sumiko Tomita |
| 1994 | ISMM | Set Operator Decomposition and Conditionally Translation Invariant Elementary Operators. | Gerald Jean Francis Banon, Junior Barrera |