| 2025 | CIBCB | Self-Attention Enhanced Deep Learning Models for Immune Cell Deconvolution from Bulk RNA-Seq. | Chia-Ru Chung, Yen-Lin Chen, Yun Tang, Justin Bo-Kai Hsu, Li-Ching Wu, Tzong-Yi Lee, Jorng-Tzong Horng |
| 2025 | CIBCB | Explainable AI-Enhanced Kinase Activity Profiling Through Phosphoproteomics. | Chia-Ru Chung, Ming-Feng Ho, Yun Tang, Li-Ching Wu, Justin Bo-Kai Hsu, Tzong-Yi Lee, Jorng-Tzong Horng |
| 2025 | CIBCB | Alzheimer's Disease Risk Prediction in the Elderly: A Machine Learning Approach Combining Clinical Characteristics and Polygenic Risk Scores. | Justin Bo-Kai Hsu, Cheng-Yang Lee, Jia-Ruey Tsai, Vijesh Kumar Yadav, Chuan Huang, Tzu-Hao Chang |
| 2025 | CIBCB | Establishing a Cross-Population Machine Learning Model for Alzheimer's Disease Risk Prediction in the Taiwanese Population. | Justin Bo-Kai Hsu, Jia-Ruey Tsai, Shih-Han Hung, Cheng-Yang Lee, Chaur-Jong Hu, Tzu-Hao Chang |
| 2025 | CIBCB | Integrative Multi-Omics Prognostic Modeling of Glioma Recurrence Using Variational Autoencoder and Similarity Network Fusion. | Phuong Lam Tran, Yun Tang, Justin Bo-Kai Hsu, Tzong-Yi Lee |
| 2025 | CIBCB | AI-Enhanced MALDI-TOF MS Analysis for Important Peaks on Predicting Ciprofloxacin Resistance across Different Gram-Negative Bacteria. | Hsin-Yao Wang, Chia-Ru Chung, Wen-Rui Zhang, Li-Ching Wu, Justin Bo-Kai Hsu, Jang-Jih Lu, Jorng-Tzong Horng |